Media 000048001: Element Unspecified
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000048001
Media type
Volumetric Image Series
Object element or part
--
Object represented
Object taxonomy
Austroglanis gilli
Side
--
Orientation
--
Short description
Austroglanis gilli SAIAB fish 58357
Full description
Migrated MorphoSource 1 Media File Title: Austroglanis gilli SAIAB fish 58357 Migrated MorphoSource 1 Media Group Title: Austroglanis gilli SAIAB fish 58357 Migrated MorphoSource 1 Media File Description: Austroglanis: Scans of the head of Austroglanis gilli (SAIAB 58357, alcoholic) for Dr. John Lundberg of the Academy of Natural Sciences, Philadelphia, PA. Specimen scanned by Matthew Colbert 4 March 2005. Original scan data are located on Archive 1192.\\r\\n\\r\\n16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.05802 mm), S.O.D. 85 mm, 1600 views, 2 samples per view, inter-slice spacing 2 lines (= 0.05802 mm), field of reconstruction 27 mm (maximum field of view 27.85481 mm), reconstruction offset 5800, reconstruction scale 1940. Acquired with 15 slices per rotation. Drift- and ring-removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routines “RK_SinoDeDrift” and “RK_SinoRingProcSimul,” both with default parameters. Reconstructed with default parameters. Rotation correction processing done by Susan Garlock using IDL routine “DoRotationCorrection”. Images flipped because specimen scanned bottom to top. Total slices = 690.\\r\\n\\r\\n8bitjpg: 8-bit JPG version of the above images.\\r\\n
Creator
--
Date created
--
Date uploaded
May 04, 2018

FILE OBJECT DETAILS Field Definitions

File name
Austroglanis_gilli_8bitjpg.zip
File format(s)
ZIP archive, JPEG
File size
51.8 MB
Image width
1024
Image height
1024
Color space
YCbCr
Color depth
8
Compression
JPEG
X pixel spacing
0.027200
Y pixel spacing
0.027200
Z pixel spacing
0.058020
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
690

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
--
IP holder
South African Institute for Aquatic Biodiversity
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
--
Publisher
--
Cite as
originally appearing in , the collection of which was funded by
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object saiab:fish:58357 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
--
Voltage
180
Power
--
Amperage
0.133
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000048001: Element Unspecified [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000048001: Element Unspecified [CTImageSeries] [Etc] (this media)