Media 000098391: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Team
· Public
Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000098391
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
Bipes biporus
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive \\r\\n\\r\\nMaisano:\\r\\nBipes: Scans of the head of Bipes biporus (CAS 126478) for Dr. Jessie Maisano of The University of Texas at Austin and ATOL. Specimen scanned by Matthew Colbert 12 July 2005. Original data located on Archive 1272.\\r\\n\\r\\n16bit: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, no offset, empty container wedge, slice thickness 2 lines (= 0.0152 mm), S.O.D. 22.2 mm, 1600 views, 3 samples per view, inter-slice spacing 2 lines (= 0.0152 mm), field of reconstruction 7.25 mm (maximum field of view 7.2679 mm), reconstruction offset 7700, scanner scale 3800, reconstruction scale 1200. Ring removal processing done by Alison Mote based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul,” with parameter “binwidth=21.” Rotation correction processing done by Alison Mote using IDL routine “DoRotationCorrection.” Total slices = 495.\\r\\n
Creator
--
Date created
--
Date uploaded
January 07, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
509 MB
Image width
686
Image height
867
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.007100
Y pixel spacing
0.007100
Z pixel spacing
0.015200
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
495

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
IP holder
California Academy of Sciences
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
EF-0334961, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: oUTCT provided access to these datadata originally appearing in Gauthier et al., 2012, with data collection funded by NSF EF-0334961 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object CAS:HERP:126478 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
1600
Voltage
180
Power
--
Amperage
133
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000098391: Head [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000098391: Head [CTImageSeries] [Etc] (this media)