Media 000098582: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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No tags found.

GENERAL DETAILS Field Definitions

Media ID
000098582
Media type
Volumetric Image Series
Object element or part
head
Object taxonomy
Notechis scutatus
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 1127\\r\\n\\r\\nMaisano\\r\\n\\r\\nNotechis: Scans of the head of Notechis scutatus (FMNH 215857) for Dr. Jessie Maisano of The University of Texas at Austin and ATOL. Specimen scanned by Richard Ketchum 15 November 2004. \\r\\n\\r\\n16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.09388 mm), S.O.D. 137 mm, 1200 views, 2 samples per view, inter-slice spacing 2 lines (= 0.09388 mm), field of reconstruction 38 mm (maximum field of view 44.89 mm), reconstruction offset 5000, reconstruction scale 1800. Acquired with 15 slices per rotation. Spike- and ring-removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routines “RK_SinoDeSpike” and “RK_SinoRingProcSimul”, with parameters “binwidth=21” and “bestof5=11”. Reconstructed with default parameters. Rotation correction processing done by Susan Garlock using IDL routine “DoRotationCorrection”. Total slices = 495.\\r\\n
Creator
--
Date created
--
Date uploaded
January 11, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
471 MB
Image width
908
Image height
638
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.037110
Y pixel spacing
0.037110
Z pixel spacing
0.093880
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
495

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
IP holder
The Field Museum of Natural History
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
EF-0334961, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: oUTCT provided access to these dataoriginally appearing in Gauthier et al., 2012, with data collection funded by NSF EF-0334961 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object FMNH:Amphibians and Reptiles:215857 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Richard Ketcham
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1200
Voltage
180
Power
--
Amperage
133
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000098582: Head [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Richard Ketcham
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000098582: Head [CTImageSeries] [Etc] (this media)