Media 000101436: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000101436
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
COLEODACTYLUS BRACHYSTOMA
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive excerpt \\r\\n\\r\\nBauer:\\r\\n103051A: Scans of the head of Coleodactylus brachystoma (UMMZ 103051) for Aaron Bauer of Villanova University. Specimen scanned by Jessie Maisano 28 April 2015. Scanned in two parts and stitched using Xradia plugin.\\r\\n\\r\\nscan parameters: Xradia. 4X objective, 80kV, 10W, 2s acquisition time, detector 24 mm, source -37 mm, XYZ [-3305, 22007, 38], camera bin 2, angles ±180, 1261 views, 0.15 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 2s). Reconstructed with center shift 2.5-2.75, beam hardening 3, theta 10, byte scaling [-1, 190], binning 1, recon filter smooth (kernel size = 0.5). Total slices = 1459.\\r\\n\\r\\n16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 4.09 microns.\\r\\n
Creator
--
Date created
--
Date uploaded
February 22, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
1.76 GB
Image width
893
Image height
921
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.004090
Y pixel spacing
0.004090
Z pixel spacing
0.004090
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,459

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
University of Michigan Museum of Zoology
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
DEB-0844523, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Aaron Bauer provided access to these data , with data collection funded by NSF DEB-0844523 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UMMZ:herps:103051 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Jessie Maisano
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
2 sec
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
1261
Voltage
80
Power
0.01
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000101436: Head [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Jessie Maisano
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000101436: Head [CTImageSeries] [Etc] (this media)