Media 000103900: Head [CTImageSeries] [Etc]
Represents:
Biological Specimen
In Collection

0 ADDITIONAL MEDIA RELATED TO ACQUISITION EVENT

COLLECTIONS MEDIA BELONGS TO

MEDIA TAGS

GENERAL DETAILS

Media ID
000103900
Media type
CTImageSeries
Object element or part
head
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive excerpt \\r\\n\\r\\nBauer:\\r\\n216284A: Scans of the head of Paragehyra gabriellae (UMMZ 216284) for Aaron Bauer of Villanova University. Specimen scanned by Jessie Maisano 30 March 2015. Scanned in two parts and stitched using Xradia plugin.\\r\\n\\r\\nscan parameters: Xradia. LFOV objective, 80kV, 10W, 2.25s acquisition time, detector 137 mm, source -42.6 mm, XYZ [692, 14411, 1298], camera bin 2, angles ±180, 1261 views, 1.0 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 2.25s). Reconstructed with center shift -6.75 or -7, beam hardening 0.2, theta -74, byte scaling [-5, 105], binning 1, recon filter smooth (kernel size = 0.5). Total slices = 1234. Voxels are 15.97 microns.\\r\\n
Creator
--
Date created
--
Date uploaded
February 26, 2020

FILE OBJECT DETAILS

File format(s)
image/tiff
File size
1.12 GB
Image width
889
Image height
614
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.015970
Y pixel spacing
0.015970
Z pixel spacing
0.015970
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,234

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
Download reviewer
IP holder
University of Michigan Museum of Zoology
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
DEB-0844523, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Aaron Bauer provided access to these data , with data collection funded by NSF DEB-0844523 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object ummz:herps:216284 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Jessie Maisano
Date
--
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Filter
--
Exposure time
2.25
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
1261
Voltage
80
Power
0.01
Amperage
--
Surrounding material
--
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000103900: Head [CTImageSeries] [Etc] (this media).

Processing Details

Creator
Jessie Maisano
Date processed
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource


Media 000103900: Head [CTImageSeries] [Etc] (this media)