Media 000113877: Head
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000113877: Head
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
Media Display
In Collections
Project
· Public
Team
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000113877
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
Sceloporus variabilis
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 1099\\r\\n\\r\\nMaisano\\r\\n\\r\\nSceloporus: Scans of the head of Sceloporus variabilis (FMNH 122866) for Dr. Jessie Maisano of The University of Texas at Austin and ATOL. Specimen scanned by Matthew Colbert 14 October 2004. \\r\\n\\r\\n16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.0391 mm), S.O.D. 57 mm, 1600 views, 2 samples per view, inter-slice spacing 2 lines (= 0.0391 mm), field of reconstruction 18 mm (maximum field of view 18.66 mm), reconstruction offset 7000, reconstruction scale 1800. Acquired with 15 slices per rotation. Spike- and ring-correction done by Susan Garlock using IDL routines “RK_SinoDeSpike” and “RK_SinoRingProcSimul,” both with default parameters. Images reconstructed at +3 degrees. Rotation correction processing done by Susan Garlock using IDL routine “DoRotationCorrection”. Total slices = 555.\\r\\n
Creator
--
Date created
--
Date uploaded
March 30, 2020
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
685 MB
Image width
951
Image height
806
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.017600
Y pixel spacing
0.017600
Z pixel spacing
0.039100
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
555
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
The Field Museum of Natural History
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
EF-0334961, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: oUTCT provided access to these dataoriginally appearing in Gauthier et al., 2012, with data collection funded by NSF EF-0334961 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
FMNH:Amphibians and Reptiles:122866
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1600
Voltage
180
Power
--
Amperage
133
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000113877: Head [CTImageSeries] [Etc] (this media).
Processing Details Field Definitions
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000113877: Head [CTImageSeries] [Etc] (this media)