Media 000114659: Skull
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000114659: Skull
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000114659
Media type
Volumetric Image Series
Object element or part
skull
Object represented
Object taxonomy
Chelydra serpentina
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 1126\\r\\n\\r\\nJamniczky:\\r\\n\\r\\nChelydra: Scans of the injected skull of Chelydra serpentina, California for Heather Jamniczky of the University of Calgary. Specimen scanned by Matthew Colbert 16 November 2004. \\r\\n\\r\\n16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.1371 mm), S.O.D. 200 mm, 1000 views, 2 samples per view, inter-slice spacing 2 lines (= 0.1371 mm), field of reconstruction 64 mm (maximum field of view 65.54073 mm), reconstruction offset 5650, reconstruction scale 1850. Acquired with 15 slices per rotation. Spike-removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routine “RK_SinoDeSpike”. Reconstructed with beam-hardening coefficients 0, 0.88, 0.07. Rotation correction processing done by Susan Garlock using IDL routine “DoRotationCorrection”. Total slices = 630.\\r\\n
Creator
--
Date created
--
Date uploaded
April 21, 2020
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
560 MB
Image width
923
Image height
640
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.062500
Y pixel spacing
0.062500
Z pixel spacing
0.137100
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
630
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
Natural Sciences and Engineering Research Council of Canada, Alberta Ingenuity Fund, The Society of Vertebrate Palaeontology, The Chelonian Research Foundation, The Systematics Association, The Palaeontological Association, and the University of Calgary
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Heather Jamniczky provided access to these data , with data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
none:uncatalogued
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1000
Voltage
180
Power
--
Amperage
133
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000114659: Skull [CTImageSeries] [Etc] (this media).
Processing Details Field Definitions
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000114659: Skull [CTImageSeries] [Etc] (this media)