Media 000114918: Skull
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000114918: Skull
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
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Project
· Public
Team
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000114918
Media type
Volumetric Image Series
Object element or part
skull
Object represented
Object taxonomy
Osteolaemus tetraspis
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 1262\\r\\n\\r\\nBrochu:\\r\\n\\r\\nOsteolaemus: Scans of the skull and jaws of Osteolaemus tetraspis (FMNH 98936) for Christopher Brochu of the University of Iowa. Specimen scanned by Matthew Colbert 23 June 2005 in 2 parts (343 and 555 scans), due to scanner crash.. \\r\\n\\r\\n16bit: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.1108 mm), S.O.D. 173 mm, 1400 views, 2 samples per view, inter-slice spacing 2 lines (= 0.1108 mm), field of reconstruction 56 mm (maximum field of view 56.69273 mm), reconstruction offset 6300, scanner scale 5660, reconstruction scale 1800. Acquired with 15 slices per rotation. Drift correction done based on raw sinogram data using IDL routine “RK_SinoDeDrift” with parameter “driftlength=21.” Reconstructed with beam hardening coefficients 0, 0.85, 0.1 and as follows for each scan set. After sets were merged and matched, overlapping slices 333-345 and blank slices at the end were deleted. Total final slices=870.\\r\\n\\n\\nRelated URL: http://digimorph.org/specimens/Osteolaemus_tetraspis/ Migrated MorphoSource 1 Media Group Description: Related URL: http://digimorph.org/specimens/Osteolaemus_tetraspis/
Creator
--
Date created
--
Date uploaded
April 26, 2020
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
997 MB
Image width
985
Image height
817
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.054700
Y pixel spacing
0.054700
Z pixel spacing
0.110800
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
870
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
The Field Museum of Natural History
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
DEB-0444133, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Chris Brochu provided access to these data , with data collection funded by NSF DEB-0444133 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
FMNH:Amphibians and Reptiles:98936
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1400
Voltage
180
Power
--
Amperage
133
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000114918: Skull [CTImageSeries] [Etc] (this media).
Processing Details Field Definitions
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000114918: Skull [CTImageSeries] [Etc] (this media)