Media 000116095: Stained Embryo
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

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Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000116095
Media type
Volumetric Image Series
Object element or part
stained embryo
Object represented
Object taxonomy
Leucoraja erinacea
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 3190\\r\\n\\r\\nCriswell:\\r\\nSt30B: Scans of an iodine-stained skate embryo (Stage 30) for Katie Criswell of the University of Chicago. Specimen scanned by Jessie Maisano 17 February 2014. Sample moved, so reconstructed with minimum number of views. \\r\\n\\r\\nscan parameters: Xradia. 4X objective, 60kV, 10W, 2.5s acquisition time, detector 44 mm, source -37 mm, XYZ [-617, 24121, 276], camera bin 2, angles ±180, 2161 views, no filter, dithering. End reference (45 frames, each for 2.5s). Reconstructed with center shift 2.5, beam hardening 1, theta 60, byte scaling [-50, 300], binning 1, recon filter smooth (kernel size = 0.6). Total slices = 910. Voxels are 3.08 microns.\\r\\n
Creator
--
Date created
--
Date uploaded
May 14, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
1.11 GB
Image width
812
Image height
995
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.003080
Y pixel spacing
0.003080
Z pixel spacing
0.003080
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
910

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
MBL/UChicago Graduate Student Research Award, DEB-1501749, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Katharine Criswell provided access to these dataoriginally appearing in Criswell et al., 2017, with data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object l-mic:30B was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Jessie Maisano
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
2.5
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
none
Projections
2161
Voltage
60
Power
0.01
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
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Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000116095: Stained Embryo [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Jessie Maisano
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000116095: Stained Embryo [CTImageSeries] [Etc] (this media)