Media 000123796: Whole Body, Stained [CTImageSeries] [Etc]
Represents:
Biological Specimen
In Collection

0 ADDITIONAL MEDIA RELATED TO ACQUISITION EVENT

COLLECTIONS MEDIA BELONGS TO

MEDIA TAGS

FILE OBJECT DETAILS

Media ID
000123796
Media type
CTImageSeries
File format(s)
image/tiff
File size
12.3 GB
Object element or part
whole body, stained
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive\\r\\n\\r\\nClarke: \\r\\nCollocalia_stained: Scan of the stained whole body of Collocalia escuelenta marginata (FMNH 503768) for Julia Clarke and Hans Bilger of The University of Texas at Austin. Specimen scanned by Matthew Colbert on 17 January 2018.\\r\\n\\r\\n16bitTIFF: Scan parameters: NSI scanner. Fein Focus High Power source, 120 kV, 0.22 mA, no filter, Perkin Elmer detector, 0.25 pF gain, 2 fps, 1x1 binning, no flip, source to object 154.0 mm, source to detector 1180.0 mm, helical continuous CT scan, vertical extent 67.2 mm, pitch 11.2 mm, 6 revolutions, 3 sets, helical sigma 0.0, no frames averaged, 0 skip frames, 14008 projections, 6 gain calibrations, 5 mm calibration phantom, data range [-10.0, 125.0] (grayscale adjusted from NSI defaults), beam-hardening correction = 0.2. Voxel size = 16.8 ?m. Total slices = 3050.
Creator
--
Date created
--
Date uploaded
June 29, 2020
Image width
1683
Image height
1481
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.016800
Y pixel spacing
0.016800
Z pixel spacing
0.016800
Pixel spacing units
Mm
Number of images in set
3,050

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging N/R, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
IP holder
The Field Museum of Natural History
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
Gordon and Betty Moore Foundation Grant 4498, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Julia Clarke provided access to these data , with data collection funded by the Gordon and Betty Moore Foundation Grant 4498 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object fmnh:birds:503768 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging N/R
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Date
--
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Filter
--
Exposure time
0.5
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
none
Projections
14008
Voltage
120
Power
--
Amperage
220
Surrounding material
0.25 pF gain
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000123796: Whole Body, Stained [CTImageSeries] [Etc] (this media).

Processing Details

Creator
Matthew Colbert
Date processed
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource


Media 000123796: Whole Body, Stained [CTImageSeries] [Etc] (this media)