Media 000125178: Trunk [Mesh] [Etc]
Represents:
Biological Specimen
In Collection

GENERAL DETAILS

Media ID
000125178
Media type
Mesh
Object element or part
trunk
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: Micro-CT volume and derivative mesh files
Creator
Benson, Roger
Date created
--
Date uploaded
July 13, 2020

FILE OBJECT DETAILS

File format(s)
application/ply
File size
365 MB
Points
4,697,803
Polygons
9,421,212
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
19.599, 23.846, 42.365
Centroid coordinates
41.159, 28.706, 28.214
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
1
Number of processing events
2 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, School of Earth Sciences Xray Tomography (XTM) Facility (University of Bristol)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
Download reviewer
--
IP holder
Oxford University Museum of Natural History
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson
Publisher
--
Cite as
Roger Benson provided access to these data originally appearing in Bjarnason A, Benson RBJ. 2021. A 3D geometric morphometric dataset quantifying skeletal variation in birds. MorphoMuseuM. https://doi.org/10.18563/journal.m3.125, the collection of which was funded by the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object oumnh:24647 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST
Device facility
School of Earth Sciences Xray Tomography (XTM) Facility (University of Bristol)
Creator
Roger Benson, Tom Davies
Date
February 08, 2021
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Filter
--
Exposure time
0.354
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2000
Voltage
140
Power
--
Amperage
215
Surrounding material
--
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000125176: Skeleton [CTImageSeries] [CT] .

Processing Details

Creator
Roger Benson, Tom Davies
Date processed
February 08, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000125176: Skeleton [CTImageSeries] [CT] was processed to create derived Media 000125178: Trunk [Mesh] [Etc] (this media).

Processing Details

Creator
TEMPO team
Date processed
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource


Media 000125178: Trunk [Mesh] [Etc] (this media)