Media 000126167: Unstained Syrinx
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
ยท Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000126167
Media type
Volumetric Image Series
Object element or part
unstained syrinx
Object represented
Object taxonomy
Ortalis motmot
Side
--
Orientation
--
Short description
unstained syrinx
Full description
Migrated MorphoSource 1 Media File Title: unstained syrinx Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive\\r\\n\\r\\nClarke: \\r\\nOrtalis_tracheae: Scan of the trachea of Ortalis motmot motmot (YPM ORN 137598) for Julia Clarke and Zhiheng Li of The University of Texas at Austin. Specimen scanned by Matthew Colbert on 13 January 2017.\\r\\n\\r\\n16bitTIFF: Scan parameters: NSI scanner. Fein Focus High Power source, 140 kV, 0.13 mA, no filter, Perkin Elmer detector, 0.25 pF gain, 1 fps, 1x1 binning, no flip, source to object 380.0 mm, source to detector 1316.832 mm, continuous CT scan, no frames averaged, 0 skip frames, 1800 projections, 5 gain calibrations, 15 mm calibration phantom, data range [-0.1, 1.05] (grayscales adjusted from NSI defaults), beam-hardening correction = 0.05. Voxel size = 65.5 ?m. Total slices = 1908.\\r\\n
Creator
--
Date created
--
Date uploaded
July 17, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
992 MB
Image width
884
Image height
377
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.065500
Y pixel spacing
0.065500
Z pixel spacing
0.065500
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,908

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Yale Peabody Museum
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
Gordon and Betty Moore Foundation Grant 4498, NSF DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Julia Clarke provided access to these data , with data collection funded by the Gordon and Betty Moore Foundation Grant 4498 and data upload to MorphoSource funded by NSF DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object YPM:VZ:YPM ORN 137598 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
1
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
none
Projections
1800
Voltage
140
Power
--
Amperage
130
Surrounding material
0.25 pF gain
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000126167: Unstained Syrinx [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000126167: Unstained Syrinx [CTImageSeries] [Etc] (this media)