Media 000166573: Whole Vertebral Column Plus Ribs
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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GENERAL DETAILS Field Definitions

Media ID
000166573
Media type
Mesh
Object element or part
Whole vertebral column plus ribs
Object represented
Object taxonomy
Siren lacertina
Object organization
Side
Midline
Orientation
--
Short description
Siren_lacertina_UMZC_R763_Vertebrae_all+ribs
Full description
Migrated MorphoSource 1 Media File Title: Siren_lacertina_UMZC_R763_Vertebrae_all+ribs Migrated MorphoSource 1 Media Group Title: Micro-CT volume and derivative mesh files
Creator
--
Date created
--
Date uploaded
November 09, 2020

FILE OBJECT DETAILS Field Definitions

File name
Siren_lacertina_UMZC_R763_Vertebrae_all.ply
File format(s)
PLY
File size
849 MB
Points
10790150
Polygons
21582806
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
69.281, 140.019, 214.986
Centroid coordinates
40.654, 85.743, 106.687
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Cambridge Biotomography Centre (University of Cambridge)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
University of Cambridge Museum of Zoology
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
Leverhulme Trust research project grant RPG-2018-381
Publisher
--
Cite as
Roger Benson provided access to these data, originally appearing in Jones et al. (2022 "Middle Jurassic fossils document an early stage in salamander evolution"), the collection of which was funded by Leverhulme Trust research project grant RPG-2018-381. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UMZC:Vertebrates:R.763 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST
Device facility
Cambridge Biotomography Centre (University of Cambridge)
Creator
Roger Benson, Tom Davies
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.5
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
1
Projections
1201
Voltage
170
Power
--
Amperage
370
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000163656: Whole Body [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Roger Benson, Tom Davies
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000163656: Whole Body [CTImageSeries] [CT] was processed to create derived Media 000166573: Whole Vertebral Column Plus Ribs [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Roger Benson, Tom Davies
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000166573: Whole Vertebral Column Plus Ribs [Mesh] [CT] (this media)