Media 000363027: Anterior Body [CTImageSeries] [CT]
Represents:
Biological Specimen
In Collection

0 ADDITIONAL MEDIA RELATED TO ACQUISITION EVENT

COLLECTIONS MEDIA BELONGS TO

MEDIA TAGS

FILE OBJECT DETAILS

Media ID
000363027
Media type
CTImageSeries
File format(s)
image/tiff
File size
2,370,102,395 bytes
Object element or part
anterior body
Side
--
Orientation
--
Short description
HRXCT scan - anterior body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1558 Cannatella: onychodactylus: Scans of the head and shoulders of a whole preserved Onychodactylus japonicus (MVZ 129400) for David Cannatella of The University of Texas at Austin, Biology Department. Specimen scanned by Matthew Colbert 19 December 2006. Images flipped. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.13 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.0313 mm), S.O.D. 45 mm, 1600 views, 3 samples per view, inter-slice spacing 2 lines (= 0.0313 mm), field of reconstruction 14.5 mm (maximum field of view 14.88 mm), reconstruction offset 7000, reconstruction scale 5500. Acquired with 19 slices per rotation and 15 slices per set. Flash and ring-removal processing done by Alison Mote based on correction of raw sinogram data using IDL routines “RK_SinoDeSpike” and “RK_SinoRingProcSimul,” both with default parameters. Reconstructed with an angle of 3.5 degrees. Last four duplicate slices of each set deleted. Rotation correction processing done by Alison Mote based on IDL routine “DoRotationCorrection.” Total final slices = 930.
Creator
--
Date created
December 19, 2006
Date uploaded
May 10, 2021
Image width
804
Image height
718
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.0142
Y pixel spacing
0.0142
Z pixel spacing
0.0313
Pixel spacing units
Mm
Number of images in set
930

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
Download reviewer
IP holder
Museum of Vertebrate Zoology
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
EF-0334952, DBI-1902242
Publisher
oUTCT PEN
Cite as
David Cannatella provided access to these data, with data collection funded by NSF EF-0334952 and data upload to MorphoSource funded by DBI-1902242.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mvz:amphibian and reptile specimens:129400 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Date
2006-12-19
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Filter
--
Frame averaging
3
Projections
1600
Voltage
180
Power
--
Amperage
130
Surrounding material
empty container
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000363027: Anterior Body [CTImageSeries] [CT] (this media).

Processing Details

Creator
Date processed
2021-05-10
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource


Media 000363027: Anterior Body [CTImageSeries] [CT] (this media)