Media 000363183: Head [CTImageSeries] [CT]
Represents:
Biological Specimen
In Collection

0 ADDITIONAL MEDIA RELATED TO ACQUISITION EVENT

COLLECTIONS MEDIA BELONGS TO

MEDIA TAGS

FILE OBJECT DETAILS

Media ID
000363183
Media type
CTImageSeries
File format(s)
image/tiff
File size
2,593,523,989 bytes
Object element or part
head
Side
--
Orientation
--
Short description
HRXCT scan - head
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1757 Cannatella: siren: Scans of a pickled head of Siren lacertina (UF 149576; male, 615 mm SVL) for Dr. David Cannatella of The University of Texas at Austin and the Amphibian Tree of Life. Specimen scanned by Matthew Colbert 25 September 2007. 16bit: 1024x1024 16-bit TIFF images. II, 200 kV, 0.11 mA, intensity control on, high-power mode, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.1467 mm), S.O.D. 211 mm, 1400 views, 2 samples per view, inter-slice spacing 2 lines (= 0.1467 mm), field of reconstruction 67 mm (maximum field of view 69.96 mm), reconstruction offset 3200, reconstruction scale 6700. Acquired with 19 slices per rotation and 15 slices per set. Ring-removal processing done by Rachel Racicot based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul” with default parameters. Deleted last four duplicate slices of each rotation. Deleted first 6 and last 18 blank slices of entire data set. Total final slices = 906.
Creator
--
Date created
September 25, 2007
Date uploaded
May 11, 2021
Image width
976
Image height
974
Color space
BlackIsZero
Color depth
16
Compression
--
Series type
Reconstructed image stack
X pixel spacing
0.0654
Y pixel spacing
0.0654
Z pixel spacing
0.1467
Pixel spacing units
Mm
Number of images in set
906

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
Download reviewer
IP holder
University of Florida
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
EF-0334952, DBI-1902242
Publisher
oUTCT PEN
Cite as
David Cannatella provided access to these data, with data collection funded by NSF EF-0334952 and data upload to MorphoSource funded by DBI-1902242.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UF:Herp:149576 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Date
2007-09-25
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Filter
--
Frame averaging
2
Projections
1400
Voltage
200
Power
--
Amperage
110
Surrounding material
empty container
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000363183: Head [CTImageSeries] [CT] (this media).

Processing Details

Creator
Date processed
2021-05-11
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource


Media 000363183: Head [CTImageSeries] [CT] (this media)