Media 000366443: Sacrum
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Project
· Public
Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000366443
Media type
Volumetric Image Series
Object element or part
sacrum
Object represented
Object taxonomy
Macaca nemestrina
Object organization
Side
--
Orientation
--
Short description
HRXCT scan - sacrum
Full description
University of Texas High-Resolution X-ray CT Facility Archive 2145 Russo: mneme: Scans of the sacrum of Macaca nemestrina (top of scan field; AMNH 35075; zoo specimen) and Macaca nemestrina nemestrina (bottom of scan field; AMNH 106564; Eurasia: Indonesia, Sumatra, Boekit Sanggoel, Benkoelen) for Gabrielle Russo of The University of Texas at Austin. Specimens scanned by Matthew Colbert 6 November 2009. 16bitrot: 1024x1024 16-bit TIFF images. II, 210 kV, 0.14 mA, intensity control off, high-power mode, no filter, air wedge, no offset, slice thickness 1 line (= 0.04773 mm), S.O.D. 137 mm, 1600 views, 1 sample per view, inter-slice spacing 1 line (= 0.04773 mm), field of reconstruction 45 mm (maximum field of view 45.57461 mm), reconstruction offset 4300, reconstruction scale 6200. Acquired with 31 slices per rotation and 25 slices per set. Ring-removal processing done by Amira Abdul-Hafiz based on correction of raw sinogram data using IDL routine “RK_SinoRingProcSimul” with parameter “bestof5=11.” Deleted first six duplicate slices of each rotation. Rotation correction done by Amira Abdul-Hafiz using IDL routine “DoRotationCorrection.” Total final slices = 1500.
Creator
Matthew Colbert
Date created
November 06, 2009
Date uploaded
June 03, 2021

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
2.75 GB
Image width
1024
Image height
880
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.043950
Y pixel spacing
0.043950
Z pixel spacing
0.047730
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,077

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Restricted Download
IP holder
AMNH Dept of Mammalogy
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by Gabrielle Russo. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object amnh:mammals:35075 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Filter
--
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
--
Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
--
Target type
--
Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
--
Phase contrast
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Optical magnification
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Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000366443: Sacrum [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
June 03, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000366443: Sacrum [CTImageSeries] [CT] (this media)