Media 000382584: Mandible
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Project
· Public
Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000382584
Media type
Mesh
Object element or part
mandible
Object represented
Object taxonomy
Tarsius pumilus
Object organization
Side
Midline
Orientation
--
Short description
--
Full description
--
Creator
zach klukkert
Date created
September 09, 2021
Date uploaded
September 10, 2021

FILE OBJECT DETAILS Field Definitions

File name
Fused_Tarsius_Mandible_2.smooth.ply
File format(s)
PLY
File size
28.6 MB
Points
399844
Polygons
799966
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
17.266, 11.958, 16.498
Centroid coordinates
9.408, 10.254, 9.469
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (4 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x, AMNH Microscopy and Imaging Facility (MIF) (American Museum of Natural History)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Open Download
IP holder
AMNH Dept of Mammalogy
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS-1552848
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-196477 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x
Device facility
AMNH Microscopy and Imaging Facility (MIF) (American Museum of Natural History)
Creator
Zach Klukkert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 3 activities to create derived Media 000382581: Mandible [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
zach klukkert, doug boyer
Event date
--
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstruction

Software
Description

Processing Activity 2: Transform: Rotation

Software
imagej
Description

Processing Activity 3: Crop

Software
imagej
Description

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000382581: Mandible [CTImageSeries] [CT] was processed with 1 activity to create derived Media 000382584: Mandible [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
zach klukkert
Event date
--
Software
Avizo
Description
--
Description attachment
None

Processing Activity 1: Point Cloud to Mesh

Software
Avizo
Description

Media produced by this event on MorphoSource

Media 000382584: Mandible [Mesh] [CT] (this media)