Media 000405556: Dicect Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
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GENERAL DETAILS Field Definitions

Media ID
000405556
Media type
Volumetric Image Series
Object element or part
DICECT-whole-body
Object represented
Object taxonomy
Megophrys minor
Side
--
Orientation
--
Short description
DiceCT dataset stained with contrast agent - 1.25% buffered Lugol's Iodine
Full description
--
Creator
Jaimi Gray
Date created
December 06, 2021
Date uploaded
December 07, 2021

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
2.72 GB
Image width
1273
Image height
1658
Color space
BlackIsZero
Color depth
16
Compression
PackBits
Series type
Reconstructed image stack
X pixel spacing
0.016084
Y pixel spacing
0.016084
Z pixel spacing
0.016084
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
3,729

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (3 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object YPM:VZ:YPM HERA 005767 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Jaimi Gray
Event date
December 06, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
250 ms
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
3
Projections
2200
Voltage
80 kV
Power
--
Amperage
200 uA
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 3 activities to create derived Media 000405556: Dicect Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Jaimi Gray
Event date
December 06, 2021
Software
GE reconstruction software and VG Studio Max
Description
Reconstruction of individual subscans and stitching together
Description attachment
None

Processing Activity 1: Reconstruction

Software
GE reconstruction software
Description
Reconstruction of individual subscans

Processing Activity 2: Histogram Editing

Software
VG Studio Max
Description
Calibration of subscans using Aluminum phantom

Processing Activity 3:

Software
VG Studio Max
Description
Alignment and stitching together subscans

Media produced by this event on MorphoSource

Media 000405556: Dicect Whole Body [CTImageSeries] [CT] (this media)