Media 000405907: Trematomus Scotti (Tsco 2018 009), Micro Ct (Iodine Stained), Whole Specimen [CTImageSeries] [CT]
Represents:
Biological Specimen
In Collection

0 ADDITIONAL MEDIA RELATED TO ACQUISITION EVENT

COLLECTIONS MEDIA BELONGS TO

MEDIA TAGS

GENERAL DETAILS

Media ID
000405907
Media type
CTImageSeries
Object element or part
Trematomus scotti (Tsco_2018_009), microCT (iodine stained), Whole specimen
Side
--
Orientation
Transversal
Short description
microCT scan of full iodine stained specimen of Trematomus scotti (Tsco_2018_009) with X-cell xenomas
Full description
--
Creator
Lauridsen, Henrik
Date created
February 26, 2021
Date uploaded
December 08, 2021

FILE OBJECT DETAILS

File format(s)
image/tiff
File size
723 MB
Image width
579
Image height
468
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.082000
Y pixel spacing
0.082000
Z pixel spacing
0.082000
Pixel spacing units
--
Slice thickness
--
Number of images in set
1,716

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical XtremeCT, Aarhus Department of Clinical Medicine (Aarhus University)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object zmuc:p:241300 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical XtremeCT
Device facility
Aarhus Department of Clinical Medicine (Aarhus University)
Creator
Lauridsen, Henrik
Date
February 26, 2021
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Filter
--
Exposure time
132
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
1000
Voltage
59.4
Power
--
Amperage
119
Surrounding material
--
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000405907: Trematomus Scotti (Tsco 2018 009), Micro Ct (Iodine Stained), Whole Specimen [CTImageSeries] [CT] (this media).

Processing Details

Creator
Lauridsen, Henrik
Date processed
February 26, 2021
Software
ImageJ
Description
Exported DICOM to TIF stack
Description attachment
None

Media produced by this event on MorphoSource


Media 000405907: Trematomus Scotti (Tsco 2018 009), Micro Ct (Iodine Stained), Whole Specimen [CTImageSeries] [CT] (this media)