Media 000405925: Trematomus Scotti (Tsco 2018 010), Micro Ct (Iodine Stained), Whole Specimen [CTImageSeries] [CT]
Represents:
Biological Specimen
In Collection

0 ADDITIONAL MEDIA RELATED TO ACQUISITION EVENT

COLLECTIONS MEDIA BELONGS TO

MEDIA TAGS

GENERAL DETAILS

Media ID
000405925
Media type
CTImageSeries
Object element or part
Trematomus scotti (Tsco_2018_010), microCT (iodine stained), Whole specimen
Side
--
Orientation
Transversal
Short description
microCT scan of full iodine stained specimen of Trematomus scotti (Tsco_2018_010) with X-cell xenomas
Full description
--
Creator
Lauridsen, Henrik
Date created
February 26, 2021
Date uploaded
December 08, 2021

FILE OBJECT DETAILS

File format(s)
image/tiff
File size
477 MB
Image width
397
Image height
468
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.082000
Y pixel spacing
0.082000
Z pixel spacing
0.082000
Pixel spacing units
--
Slice thickness
--
Number of images in set
1,716

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical XtremeCT, Aarhus Department of Clinical Medicine (Aarhus University)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object zmuc:p:241301 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical XtremeCT
Device facility
Aarhus Department of Clinical Medicine (Aarhus University)
Creator
Lauridsen, Henrik
Date
February 26, 2021
Software
Scanco user software
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Filter
--
Exposure time
132
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
1000
Voltage
59.4
Power
--
Amperage
119
Surrounding material
--
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000405925: Trematomus Scotti (Tsco 2018 010), Micro Ct (Iodine Stained), Whole Specimen [CTImageSeries] [CT] (this media).

Processing Details

Creator
Lauridsen, Henrik
Date processed
February 26, 2021
Software
ImageJ
Description
Exported DICOM to TIF-stack
Description attachment
None

Media produced by this event on MorphoSource


Media 000405925: Trematomus Scotti (Tsco 2018 010), Micro Ct (Iodine Stained), Whole Specimen [CTImageSeries] [CT] (this media)