Media 000414454: Navicular [Mesh] [CT]
Represents:
Biological Specimen
In Collection

1 ADDITIONAL MEDIA RELATED TO ACQUISITION EVENT

COLLECTIONS MEDIA BELONGS TO

MEDIA TAGS

FILE OBJECT DETAILS

Media ID
000414454
Media type
Mesh
File format(s)
application/ply
File size
4.88 MB
Object element or part
navicular
Side
Right
Orientation
--
Short description
--
Full description
--
Creator
doug boyer
Date created
January 16, 2022
Date uploaded
January 16, 2022
Points
73,313
Polygons
146,622
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
3.983, 4.563, 4.501
Centroid coordinates
35.805, 29.144, 19.891
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
1
Number of processing events
2 (4 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Duke Share Materials Instrumentation Facility (SMiF) (Duke University)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Open Download
Download reviewer
IP holder
AMNH Dept of Mammalogy
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS 1552848 (to DM Boyer)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-200525 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST
Device facility
Duke Share Materials Instrumentation Facility (SMiF) (Duke University)
Creator
--
Date
--
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Filter
--
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2000
Voltage
120
Power
14.4
Amperage
120
Surrounding material
air
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 3 activities to create derived Media 000410491: Feet [CTImageSeries] [CT] .

Processing Details

Creator
Date processed
--
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstruction

Software
Description

Processing Activity 2: Crop

Software
Image J
Description

Processing Activity 3: Transform: Reflection

Software
Image J
Description

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000410491: Feet [CTImageSeries] [CT] was processed with 1 activity to create derived Media 000414454: Navicular [Mesh] [CT] (this media).

Processing Details

Creator
doug boyer
Date processed
2022-01-16
Software
avizo
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
avizo
Description
constrained smoothing applied

Media produced by this event on MorphoSource


Media 000414454: Navicular [Mesh] [CT] (this media)