Media 000421612: Crania
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000421612
Media type
Volumetric Image Series
Object element or part
Crania
Object represented
Object taxonomy
Dearc sgiathanach
Side
--
Orientation
--
Short description
Trained segmented anterior aspect of crania using WEKA function in ImageJ Fiji
Full description
--
Creator
Natalia Jagielska
Date created
December 03, 2019
Date uploaded
February 11, 2022

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
8.34 MB
Image width
1433
Image height
1411
Color space
RGB Palette
Color depth
8
Compression
--
X pixel spacing
1433.000000
Y pixel spacing
1411.000000
Z pixel spacing
1998.000000
Pixel spacing units
--
Slice thickness
--
Number of images in set
1,998

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Custom Make microCT Scanner Assembled In-House, School of Geosciences (University of Edinburgh)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Custom Make microCT Scanner Assembled In-House
Device facility
School of Geosciences (University of Edinburgh)
Creator
Ian Butler
Event date
--
Software
Octopus v8.9
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
Yes
Pixel spacing calibration
--
Shading correction
--
Frame averaging
2
Projections
2000
Voltage
110 keV
Power
50 W
Amperage
--
Surrounding material
Oolite limestone with cubic pyrite
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
No
Acquisition type
Sequenced

Media produced by this event on MorphoSource

STEP 2: IMAGE PROCESSING

Raw Media 000420019: Cervical & Atlas Axis, Crania [CTImageSeries] [CT] was processed to create derived Media 000421612: Crania [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Natalia Jagielska
Event date
December 03, 2019
Software
Fiji (Trainable Weka Segmentation)
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000421612: Crania [CTImageSeries] [CT] (this media)