Media 000448752: Head
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000448752
Media type
Mesh
Object element or part
head
Object represented
Object taxonomy
Micrurus nigrocinctus
Object organization
Side
--
Orientation
--
Short description
--
Full description
mesh from microCT volume, data inverted following CT scan Record created by batch submission.
Creator
Braker, Emily
Date created
April 28, 2022
Date uploaded
July 01, 2022

FILE OBJECT DETAILS Field Definitions

File name
UCM_HERP_45827_Micrurus_nigrocinctus_zunilensis_mesh.stl
File format(s)
STL
File size
1.23 GB
Points
3744372
Polygons
7455646
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
8.956, 25.347, 11.621
Centroid coordinates
10.313, -12.537, 5.748
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 520 Versa x-ray microscope (xrm), Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
University of Colorado Museum of Natural History
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oMeso PEN NSF DBI-2001474; oVert TCN partner NSF DBI-1701714
Publisher
University of Colorado Museum of Natural History
Cite as
UCM Herp [catalog number]
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UCM:Herp:UCM:Herp:45827 was imaged to create raw Media 000448748: Head [CTImageSeries] [CT].

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 520 Versa x-ray microscope (xrm)
Device facility
Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)
Creator
--
Event date
--
Software
Scout-and-Scan Control System
Description
--
Description attachment
None
Reference attachment
None
Exposure time
2.0
Flux normalization
--
Pixel spacing calibration
Geometry
Shading correction
--
Frame averaging
1.0
Projections
1601.0
Voltage
120.0
Power
0.01
Amperage
83.33333333
Surrounding material
--
X-ray tube type
--
Target type
Transmission
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
Area (single or tiled detector)
Source object distance
--
Source detector distance
--
Target material
tungsten
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
Sequenced

Media produced by this event on MorphoSource

STEP 2: IMAGE PROCESSING

Raw Media 000448748: Head [CTImageSeries] [CT] was processed to create derived Media 000448752: Head [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Braker, Emily
Event date
May 18, 2022
Software
Dragonfly
Description
Reconstructed tomography to mesh, with smoothing and noise reduction
Description attachment
None

Media produced by this event on MorphoSource

Media 000448752: Head [Mesh] [CT] (this media)