Media 000450082: Femur
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000450082
Media type
Mesh
Object element or part
femur
Object represented
Object taxonomy
Galago moholi
Object organization
Side
Left
Orientation
--
Short description
from articulated individual
Full description
--
Creator
doug boyer
Date created
July 13, 2022
Date uploaded
July 13, 2022

FILE OBJECT DETAILS Field Definitions

File name
dlc-3007f_femur.ply
File format(s)
PLY
File size
39.9 MB
Points
553828
Polygons
1107652
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
53.009, 8.965, 24.205
Centroid coordinates
39.512, 34.725, 80.050
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (2 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Restricted Download
IP holder
Duke Lemur Center
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF BCS 1552848 (to DM Boyer)
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object dlc:3007f was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST
Device facility
Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)
Creator
Gabriel Yapuncich, Darbi Griffith
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2000
Voltage
170
Power
0.02788
Amperage
164
Surrounding material
Air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000016919: Full Body [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Gabriel Yapuncich, Darbi Griffith
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000016919: Full Body [CTImageSeries] [Etc] was processed with 2 activities to create derived Media 000450082: Femur [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
doug boyer
Event date
July 13, 2022
Software
avizo
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
avizo
Description
used segmentation editor to extract left femur

Processing Activity 2: Smoothing/Noise Reduction

Software
avizo
Description
cleaned up raw mesh

Media produced by this event on MorphoSource

Media 000450082: Femur [Mesh] [CT] (this media)