Media 000453802: Semicircular Canals Of The Inner Ear Of The Heterocephalus Glaber
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
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TAGS

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GENERAL DETAILS Field Definitions

Media ID
000453802
Media type
Mesh
Object element or part
semicircular canals of the inner ear of the heterocephalus glaber
Object represented
Object taxonomy
Heterocephalus glaber
Side
--
Orientation
--
Short description
3D reconstruction of the semicircular canals of the vestibular system of the inner ear of subterranean mammals (H. glaber)
Full description
--
Creator
--
Date created
January 12, 2020
Date uploaded
August 02, 2022

FILE OBJECT DETAILS Field Definitions

File name
3D_Model_Amira.zip
File format(s)
ZIP archive, STL
File size
865 MB
Points
1478992
Polygons
2963090
Map type
Color
UV coordinates
False
Vertex color
False
Bounding box dimensions
507.933, 538.284, 572.000
Centroid coordinates
628.132, 713.905, 584.633
Units of point coordinates
Um

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (4 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1172, Bruker MicroCT (Bruker MicroCT)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object pdn:pe-pi was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1172
Device facility
Bruker MicroCT (Bruker MicroCT)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
3450 ms
Flux normalization
Yes
Pixel spacing calibration
Geometry
Shading correction
Yes
Frame averaging
6
Projections
--
Voltage
60 KV
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
Direct (X-Ray photoconductor)
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
Area (single or tiled detector)
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
0,11
Phase contrast
Yes
Optical magnification
Yes
Acquisition type
Sequenced

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed with 3 activities to create derived Media 000453798: Internal Ear [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
--
Event date
January 13, 2019
Software
NReco software
Description
--
Description attachment
None

Processing Activity 1: Smoothing/Noise Reduction

Software
NReco Software
Description

Processing Activity 2: Reconstruction

Software
NReco Software
Description

Processing Activity 3: Crop

Software
IrfanView 64 Software
Description

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000453798: Internal Ear [CTImageSeries] [CT] was processed with 1 activity to create derived Media 000453802: Semicircular Canals Of The Inner Ear Of The Heterocephalus Glaber [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
January 12, 2020
Software
--
Description
--
Description attachment
None

Processing Activity 1: Reconstructed Tomography to Mesh

Software
Amira
Description

Media produced by this event on MorphoSource

Media 000453802: Semicircular Canals Of The Inner Ear Of The Heterocephalus Glaber [Mesh] [CT] (this media)