Media 000480891: Whole Body
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

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Project
· Public

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GENERAL DETAILS Field Definitions

Media ID
000480891
Media type
Mesh
Object element or part
whole body
Object represented
Object taxonomy
Hypopachus variolosus
Object organization
Side
--
Orientation
--
Short description
--
Full description
mesh from microCT volume, data inverted following CT scan Record created by batch submission.
Creator
Pittman, Cameron
Date created
November 06, 2022
Date uploaded
November 09, 2022

FILE OBJECT DETAILS Field Definitions

File name
UCM_HERP_66446_Hypopachus_variolosus_mesh.stl
File format(s)
STL
File size
460 MB
Points
1400116
Polygons
2800420
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
39.181, 43.659, 20.607
Centroid coordinates
24.534, 26.939, 25.988
Units of point coordinates
--

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 520 Versa x-ray microscope (xrm), Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
University of Colorado Museum of Natural History
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oVert TCN partner NSF DBI-1701714; oMeso PEN NSF DBI-2001474
Publisher
University of Colorado Museum of Natural History
Cite as
UCM [catalog number]
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UCM:Herp:UCM:Herp:66446 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 520 Versa x-ray microscope (xrm)
Device facility
Materials Instrumentation and Multimodal Imaging Core Facility (MIMIC) (University of Colorado, Boulder)
Creator
Coulombe, Jennifer
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.349999994
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
3201
Voltage
150
Power
0.01005000019
Amperage
0.067000001
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000387229: Whole Body [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Coulombe, Jennifer
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

STEP 3: IMAGE PROCESSING

Derived Media 000387229: Whole Body [CTImageSeries] [CT] was processed to create derived Media 000480891: Whole Body [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Pittman, Cameron
Event date
November 06, 2022
Software
Dragonfly
Description
Reconstructed tomography to mesh, with smoothing and noise reduction
Description attachment
None

Media produced by this event on MorphoSource

Media 000480891: Whole Body [Mesh] [CT] (this media)