Media 000633167: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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Project
ยท Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000633167
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
Object taxonomy
Chelydra serpentina
Object organization
Side
--
Orientation
--
Short description
HRXCT scan -- whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive Stayton: Chelydra: Scan of a whole Chelydra serpentina (CM 35931) for Tristan Stayton of Bucknell University. Specimen scanned by Matthew Colbert 19 December 2014. 16bit: Scan parameters: NSI scanner. Feinfocus source, high power, 180 kV, 0.14 mA, no filter, Perkin Elmer detector, 0.5 pF gain, 2 fps (499.893 ms integration time), no binning, no flip, source to object 610 mm, source to detector 1066 mm, continuous CT scan, no frames averaged, 0 skip frames, 3600 projections, 6 gain calibrations, 15 mm calibration phantom, data range [-1, 7] (grayscale range adjusted from NSI defaults), beam-hardening correction = 0.35. Voxel size = 0.1668 mm. Total slices = 1853.
Creator
Matthew Colbert
Date created
December 19, 2014
Date uploaded
May 30, 2024

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
2.83 GB
Image width
1388
Image height
715
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.166800
Y pixel spacing
0.166800
Z pixel spacing
0.166800
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,853

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Carnegie Museum
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data acquired for C. Tristan Stayton. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object cm:herps:35931 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
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Description
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Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000633167: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000633167: Whole Body [CTImageSeries] [CT] (this media)