Media 000633167: Whole Body
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000633167: Whole Body
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000633167
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
Object taxonomy
Chelydra serpentina
Object organization
Side
--
Orientation
--
Short description
HRXCT scan -- whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive
Stayton:
Chelydra: Scan of a whole Chelydra serpentina (CM 35931) for Tristan Stayton of Bucknell University. Specimen scanned by Matthew Colbert 19 December 2014.
16bit: Scan parameters: NSI scanner. Feinfocus source, high power, 180 kV, 0.14 mA, no filter, Perkin Elmer detector, 0.5 pF gain, 2 fps (499.893 ms integration time), no binning, no flip, source to object 610 mm, source to detector 1066 mm, continuous CT scan, no frames averaged, 0 skip frames, 3600 projections, 6 gain calibrations, 15 mm calibration phantom, data range [-1, 7] (grayscale range adjusted from NSI defaults), beam-hardening correction = 0.35. Voxel size = 0.1668 mm. Total slices = 1853.
Creator
Matthew Colbert
Date created
December 19, 2014
Date uploaded
May 30, 2024
FILE OBJECT DETAILS Field Definitions
File name
16bitTIFF.zip
File format(s)
ZIP archive, TIFF
File size
2.83 GB
Image width
1388
Image height
715
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.166800
Y pixel spacing
0.166800
Z pixel spacing
0.166800
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,853
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Carnegie Museum
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data acquired for C. Tristan Stayton. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
cm:herps:35931
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000633167: Whole Body [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000633167: Whole Body [CTImageSeries] [CT] (this media)