Media 000633180: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
cm:herps:58444 Testudo graeca
Managed by
Jessie Maisano

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Media produced from the same original imaging that created Media 000633180 (this media). Includes all media associated with this media through an imaging and processing workflow.

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Project
ยท Public

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GENERAL DETAILS Field Definitions

Media ID
000633180
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
cm:herps:58444
Object taxonomy
Testudo graeca
Object organization
CM Herps Collection
Side
--
Orientation
--
Short description
HRXCT scan -- whole body
Full description
University of Texas High-Resolution X-ray CT Facility Archive 3211 Stayton: kisu_tegr: Scans of two whole turtles, Kinosternon subrufum (CM 38299; top of field of view), and Testudo graeca (CM58444; bottom of field of view) for C. Tristan Stayton of Bucknell University. Specimens scanned by Matthew Colbert 7 April 2014. 16bit: Scan parameters: NSI scanner. Feinfocus source, high power, 180 kV, 0.25 mA, no filter, Perkin Elmer detector, 0.25 pF gain, 4 fps (249.884 ms integration time), no binning, no flip, source to object 328.921 mm, source to detector 1125 mm, continuous CT scan, no frames averaged, 0 skip frames, 9000 projections, 6 gain calibrations, 5 mm calibration phantom, data range [-8, 100] (rescaled from NSI default). Voxel size = 0.0865 mm, beam-hardening correction = 0.5. Total slices = 1791.
Creator
Matthew Colbert
Date created
April 07, 2014
Date uploaded
May 30, 2024

FILE OBJECT DETAILS Field Definitions

File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
2.25 GB
Image width
1093
Image height
753
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.086500
Y pixel spacing
0.086500
Z pixel spacing
0.086500
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,791

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Jessie Maisano
Data uploaded by
Zachariah Saiz
Publication status
Restricted Download
Download reviewer
Jessie Maisano
IP holder
Carnegie Museum
Copyright statement
 In Copyright
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data acquired for C. Tristan Stayton. Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/633180
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object cm:herps:58444 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
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Pixel spacing calibration
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Shading correction
--
Frame averaging
--
Projections
--
Voltage
--
Power
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Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000633180: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000633180: Whole Body [CTImageSeries] [CT] (this media)