Media 000637665: Left Petrosal
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Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000637665: Left Petrosal
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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GENERAL DETAILS Field Definitions
Media ID
000637665
Media type
Volumetric Image Series
Object element or part
left petrosal
Object represented
Object taxonomy
Lipotes vexillifer
Object organization
Side
--
Orientation
--
Short description
HRXCT scan of left petrosal
Full description
University of Texas High-Resolution X-ray CT Facility Archive 2441
Geisler:
57333A: Scans of the left petrosal of Lipotes vexillifer (AMNH 57333) for Jonathan Geisler of the New York College of Osteopathic Medicine. Specimen scanned by Jessie Maisano 25 April 2011.
scan parameters: Xradia. 0.5X objective, 90kV, 10W, 2s acquisition time, detector 135 mm, source -47.9 mm, XYZ [1249, 6531, -853], camera bin 2, angles ±103, 516 views, 2.1 mm SiO2 filter, dithering, no sample drift correction. End reference (45 frames, each for 1s). Crop-and-fill plugin applied. Reconstructed with center shift -1, beam hardening 0.05, theta 0, byte scaling [-15, 45], binning 1, recon filter smooth (kernel size = 0.8). Total slices = 805.
57333A.rcp: Xradia recipe with scan parameters.
16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 14.78 microns.
Creator
Jessie Maisano
Date created
April 25, 2011
Date uploaded
June 17, 2024
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
1.06 GB
Image width
1012
Image height
1024
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.014780
Y pixel spacing
0.014780
Z pixel spacing
0.014780
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
805
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
AMNH Dept of Mammalogy
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242, DEB-1025260
Publisher
oUTCT PEN
Cite as
Funding for scanning was provided by NSF grant DEB-1025260 to Jonathan Geisler. Funding for data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
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IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
amnh:mammals:57333
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
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Description
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Description attachment
None
Reference attachment
None
Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
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Frame averaging
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Projections
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Voltage
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Power
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Amperage
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X-ray tube type
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Target type
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Detector type
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Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000637665: Left Petrosal [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Media produced by this event on MorphoSource
Media 000637665: Left Petrosal [CTImageSeries] [CT] (this media)