Media 000075191: Astragalus
Restricted Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Project
· Public
Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000075191
Media type
Mesh
Object element or part
Astragalus
Object represented
Object taxonomy
Allenopithecus nigroviridis
Object organization
Side
Right
Orientation
--
Short description
Astragalus
Full description
Migrated MorphoSource 1 Media File Title: Astragalus Migrated MorphoSource 1 Media Group Title: Raw image data Migrated MorphoSource 1 Media Group Description: Any 3D surface uploaded for this specimen/element was produced with either the Isosurface or LabelField functions in AMIRA v.5.6 or later, and is best regarded as minimally processed for smoothing and hole filling (unless otherwise noted). If raw image data (i.e., slices) for this specimen/element have been uploaded, they may appear as a single 3D Tiff format file produced in AMIRA v.5.6 or later. This file can be opened in most versions of AMIRA or AVIZO without needing additional input for scale (i.e., the voxel resolution is recognized). This file can also be opened in ImageJ but will require the user to scale the images with provided information on voxel dimensions prior to working with them.
Creator
--
Date created
--
Date uploaded
April 15, 2019

FILE OBJECT DETAILS Field Definitions

File name
Allenopithecus-nigroviridis-M-AMNH-86856-Ast-R.ply
File format(s)
PLY
File size
42.4 MB
Points
589575
Polygons
1179106
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
13.624, 17.989, 14.435
Centroid coordinates
22.514, 33.973, 8.942
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical µCT 50, Molecular Imaging Center (University of Southern California)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
AMNH Dept of Mammalogy
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
National Science Foundation [BCS 1317047 (to Biren Patel), BCS 1539741 (to Caley Orr)], the L.S.B. Leakey Foundation (to Biren Patel), the Wenner-Gren Foundation (to Caley Orr), and the University of Southern California (to Biren Patel).
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Biren Patel provided access to these data. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-86856 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical µCT 50
Device facility
Molecular Imaging Center (University of Southern California)
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
--
Voltage
--
Power
--
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived private media that exists on MorphoSource but is inaccessible with current user permissions.

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Private media inaccessible with current permissions

STEP 3: IMAGE PROCESSING

Derived private media was processed to create derived Media 000075191: Astragalus [Mesh] [Etc] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000075191: Astragalus [Mesh] [Etc] (this media)