Media 000125579: Skeleton
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000125579
Media type
Volumetric Image Series
Object element or part
skeleton
Object represented
Object taxonomy
Chauna chavaria
Side
--
Orientation
--
Short description
--
Full description
Micro-CT volume and derivative mesh files
Creator
Benson, Roger
Date created
--
Date uploaded
July 14, 2020

FILE OBJECT DETAILS Field Definitions

File name
Chauna_chavaria_OUMNH23790_8bit_cropped.zip
File format(s)
ZIP archive, TIFF
File size
1.24 GB
Image width
1480
Image height
984
Color space
BlackIsZero
Color depth
8
Compression
--
X pixel spacing
0.112140
Y pixel spacing
0.112140
Z pixel spacing
0.112140
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
2,543

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, School of Earth Sciences Xray Tomography (XTM) Facility (University of Bristol)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
IP holder
Oxford University Museum of Natural History (Copyright and License)
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson
Publisher
Benson, Roger
Cite as
Roger Benson provided access to these data originally appearing in Bjarnason A, Benson RBJ. 2021. A 3D geometric morphometric dataset quantifying skeletal variation in birds. MorphoMuseuM. https://doi.org/10.18563/journal.m3.125, the collection of which was funded by the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object oumnh:23790 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST
Device facility
School of Earth Sciences Xray Tomography (XTM) Facility (University of Bristol)
Creator
Roger Benson, Tom Davies
Event date
February 07, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.354
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
2000
Voltage
140
Power
--
Amperage
286
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000125579: Skeleton [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Roger Benson, Tom Davies
Event date
February 07, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000125579: Skeleton [CTImageSeries] [CT] (this media)