Media 000362638: Humerus
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000362638
Media type
Mesh
Object element or part
Humerus
Object represented
Object taxonomy
Leontopithecus rosalia
Object organization
Side
Left
Orientation
--
Short description
--
Full description
--
Creator
--
Date created
--
Date uploaded
May 06, 2021

FILE OBJECT DETAILS Field Definitions

File name
L.rosalia_AMNH_235275_humerus_500k_V2R.ply
File format(s)
PLY
File size
17.4 MB
Points
250012
Polygons
500020
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
8.206, 9.710, 57.596
Centroid coordinates
4.980, 5.880, 25.595
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (4 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Open Download
IP holder
AMNH Dept of Mammalogy
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
IPF 2017-389
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-235275 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST
Device facility
Duke Shared Materials Instrumentation Facility (SMiF) (Duke University)
Creator
Justin Gladman
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.354
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
2500
Voltage
170
Power
--
Amperage
79
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000085230: Femur, Fibula, Humerus, Radius, Tibia, Ulna [CTImageSeries] [Etc].

Processing Details Field Definitions

Creator
Justin Gladman
Event date
--
Software
--
Description
--
Description attachment
None

STEP 3: IMAGE PROCESSING

Derived Media 000085230: Femur, Fibula, Humerus, Radius, Tibia, Ulna [CTImageSeries] [Etc] was processed with 4 activities to create derived Media 000362638: Humerus [Mesh] [CT] (this media).

Processing Details Field Definitions

Creator
Léo Botton-Divet
Event date
May 06, 2021
Software
--
Description
--
Description attachment
None

Processing Activity 1: Crop

Software
Fiji
Description

Processing Activity 2: Reconstructed Tomography to Mesh

Software
Avizo
Description

Processing Activity 3: Smoothing/Noise Reduction

Software
Meshlab
Description
removal of inner structure (ambiant occlusion+low values vertices removal)

Processing Activity 4: Smoothing/Noise Reduction

Software
Geomagic Wrap
Description
cleaning and decimation

Media produced by this event on MorphoSource

Media 000362638: Humerus [Mesh] [CT] (this media)