Media 000376346: Whole Body
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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GENERAL DETAILS Field Definitions

Media ID
000376346
Media type
Volumetric Image Series
Object element or part
whole body
Object represented
Object taxonomy
Artemisiospiza nevadensis
Object organization
Side
--
Orientation
--
Short description
zipped tiff stack
Full description
microCT volume and derivatives, fluid-preserved bird
Creator
Baumgart, Stephanie
Date created
March 27, 2019
Date uploaded
August 10, 2021

FILE OBJECT DETAILS Field Definitions

File name
KU_B_54972_Amphispiza_ImageStack.zip
File format(s)
ZIP archive, TIFF
File size
285 MB
Image width
554
Image height
558
Color space
BlackIsZero
Color depth
16
Compression
PackBits
X pixel spacing
0.055898
Y pixel spacing
0.055898
Z pixel spacing
0.055898
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,960

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x s, UChicago PaleoCT (University of Chicago)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
University of Kansas Museum of Natural History
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
oVert TCN; NSF DBI-1702421; NSF DBI-1701714; NSF DBI-1701932
Publisher
--
Cite as
University of Kansas Natural History Museum provided access to these data , the collection of which was funded by oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object KU:KUO:54972 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x s
Device facility
UChicago PaleoCT (University of Chicago)
Creator
Coldren, Daryl
Event date
March 20, 2019
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.02
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
3
Projections
900
Voltage
110
Power
0.033
Amperage
300
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000376346: Whole Body [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Baumgart, Stephanie
Event date
March 27, 2019
Software
VGStudio Max 3.3
Description
calibrated histogram to highest and lowest densities, cropped ROI down
Description attachment
None

Media produced by this event on MorphoSource

Media 000376346: Whole Body [CTImageSeries] [CT] (this media)