Media 000405892: Trematomus Scotti (Tsco 2018 008), Micro Ct (Unstained), Whole Specimen
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000405892: Trematomus Scotti (Tsco 2018 008), Micro Ct (Unstained), Whole Specimen
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000405892
Media type
Volumetric Image Series
Object element or part
Trematomus scotti (Tsco_2018_008), microCT (unstained), Whole specimen
Object represented
Object taxonomy
Trematomus scotti
Object organization
Side
--
Orientation
Transversal
Short description
microCT scan of full unstained specimen of Trematomus scotti (Tsco_2018_008) with X-cell xenomas
Full description
--
Creator
Lauridsen, Henrik
Date created
October 23, 2020
Date uploaded
December 08, 2021
FILE OBJECT DETAILS Field Definitions
File name
Tsco_2018-008_microCT_FullBody_NonStained.zip
File format(s)
ZIP archive, TIFF
File size
305 MB
Image width
355
Image height
428
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.082000
Y pixel spacing
0.082000
Z pixel spacing
0.082000
Pixel spacing units
--
Slice thickness
--
Number of images in set
1,315
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Scanco Medical XtremeCT, Aarhus Department of Clinical Medicine (Aarhus University)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
zmuc:p:241299
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Aarhus Department of Clinical Medicine (Aarhus University)
Creator
Lauridsen, Henrik
Event date
October 23, 2020
Software
Scanco user software
Description
--
Description attachment
None
Reference attachment
None
Exposure time
132
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
1000
Voltage
59.4
Power
--
Amperage
119
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000405892: Trematomus Scotti (Tsco 2018 008), Micro Ct (Unstained), Whole Specimen [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
Lauridsen, Henrik
Event date
October 23, 2020
Software
ImageJ
Description
Exported from DICOM to TIF stack
Description attachment
None