Media 000436303: Appendages On The Rostral Part Of The Tail
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
ยท Public

GENERAL DETAILS Field Definitions

Media ID
000436303
Media type
Volumetric Image Series
Object element or part
Appendages on the rostral part of the tail
Object represented
Object taxonomy
Phyllopteryx taeniolatus
Side
--
Orientation
--
Short description
Weedy seadragon appendages
Full description
Pair of appendages on the rostral portion of the weedy seadragon tail were scanned with an Xradia Versa 620.
Creator
--
Date created
--
Date uploaded
April 26, 2022

FILE OBJECT DETAILS Field Definitions

File name
Seadragon_leave_tiff.zip
File format(s)
ZIP archive, TIFF
File size
1.17 GB
Image width
1004
Image height
1016
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
27.000000
Y pixel spacing
27.000000
Z pixel spacing
27.000000
Pixel spacing units
Um
Slice thickness
--
Number of images in set
1,024

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 620, Knight Campus X-ray Imaging Core Facility (University of Oregon)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
PNAS
Cite as
Leafy and Weedy Seadragon Genomes Connect Genic and Repetitive DNA Features to the Extravagant Biology of Syngnathid Fishes. Clay Small, Hope M. Healey, Mark C. Currey, Emily A. Beck, Julian Catchen, A. Lin, William A. Cresko, Susan Bassham. PNAS. 2022.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UO:PTA:01 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia 620
Device facility
Knight Campus X-ray Imaging Core Facility (University of Oregon)
Creator
--
Event date
--
Software
Dragonfly Pro
Description
A piece of the tail stained in Lugol's iodine (11.25% for 14 days) was scanned at 27uM resolution. The piece had a pair of the rostral appendages. It was scanned at a 27uM resolution with an energy of 80kV, power of 10W, objective of .4X, and binning of 2.
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
--
Projections
--
Voltage
80kV
Power
10W
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000436303: Appendages On The Rostral Part Of The Tail [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
--
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000436303: Appendages On The Rostral Part Of The Tail [CTImageSeries] [CT] (this media)