Media 000097849: Navicular
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Project
· Public
Team
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000097849
Media type
Mesh
Object element or part
navicular
Object represented
Object taxonomy
Symphalangus syndactylus
Object organization
Side
Left
Orientation
--
Short description
mesh file
Full description
Migrated MorphoSource 1 Media File Title: mesh file Migrated MorphoSource 1 Media Group Title: Raw image data Migrated MorphoSource 1 Media File Description: Doug Boyer Migrated MorphoSource 1 Media Group Description: DICOM stacks that can be opened in most versions of AMIRA or AVIZO without needing additional input for scale (i.e., the voxel resolution is recognized). This file can also be opened in ImageJ but will require the user to scale the images with provided information on voxel dimensions prior to working with them.
Creator
--
Date created
--
Date uploaded
December 13, 2019

FILE OBJECT DETAILS Field Definitions

File name
AMNH-237504-Symphalangus_navicular.ply
File format(s)
PLY
File size
8.25 MB
Points
121570
Polygons
243136
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
17.439, 9.557, 12.624
Centroid coordinates
50.560, 11.314, 149.811
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x, AMNH Microscopy and Imaging Facility (MIF) (American Museum of Natural History)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
AMNH Dept of Mammalogy
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Permitted
Required archival of published derivatives
On MorphoSource
Funding attribution
National Science Foundation (BCS 1316947 to Sergio Almécija and William Jungers), and Stony Brook University.
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Sergio Almécija provided access to these data with data collection funded by the National Science Foundation (BCS 1316947 to Sergio Almécija and William Jungers), and Stony Brook University. Specimen curation at the AMNH was facilitated by Eileen Westwig and Eleanor Hoeger. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Mammals:M-237504 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x
Device facility
AMNH Microscopy and Imaging Facility (MIF) (American Museum of Natural History)
Creator
Sergio Almecija
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
--
Projections
--
Voltage
140
Power
--
Amperage
180
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived private media that exists on MorphoSource but is inaccessible with current user permissions.

Processing Details Field Definitions

Creator
Sergio Almecija
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Private media inaccessible with current permissions

STEP 3: IMAGE PROCESSING

Derived private media was processed to create derived Media 000097849: Navicular [Mesh] [Etc] (this media).

Processing Details Field Definitions

Creator
Sergio Almécija
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000097849: Navicular [Mesh] [Etc] (this media)