Media 000114657: Embryo
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000114657
Media type
Volumetric Image Series
Object element or part
embryo
Object represented
Object taxonomy
Phrynosoma taurus
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 0414\\r\\n\\r\\nRowe:\\r\\n Ptaurus: Scans of an embryonic specimen of Phrynosoma taurus, (WLH1081: Embryo. Embryo removed from female on Archive 0395). Scanned for Dr. Timothy Rowe of the University of Texas Department of Geological Sciences and Wendy Hodges of the Zoology Department.\\r\\n\\r\\nbabe: Original scans: II, 150 kV, 0.16 mA, no filter, air wedge, 160% offset, slice thickness 4 lines (= 0.059 mm), S.O.D. 25.6 mm, 1800 views, 2 samples per view, interslice spacing 4 lines (=0.059 mm), field of reconstruction 12.3 mm (maximum field of view 12.959724 mm), reconstruction offset 900, reconstruction scale 12. Scanned in three-slice mode.\\r\\nFile header not modified.\\r\\n\\r\\nbabe/warpcorr: The above images modified with IDL software “Unwarp v.1.0” written by Dr. Richard Ketcham to correct for radial distortion of images introduced by ACTIS scanning software. Corrected images are now 522 pixels by 522 pixels, resulting in a revised field of reconstruction of 12.5402 mm.\\r\\n\\n\\nRelated URL: http://digimorph.org/specimens/Phrynosoma_taurus/head/ Migrated MorphoSource 1 Media Group Description: Related URL: http://digimorph.org/specimens/Phrynosoma_taurus/head/
Creator
--
Date created
--
Date uploaded
April 21, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
76 MB
Image width
522
Image height
393
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.024000
Y pixel spacing
0.024000
Z pixel spacing
0.059000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
303

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
--
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
IIS-9874781, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Tim Rowe and Wendy Hodges provided access to these data , with data collection funded by NSF IIS-9874781 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object l-wlh:1081 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1800
Voltage
150
Power
--
Amperage
160
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000114657: Embryo [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000114657: Embryo [CTImageSeries] [Etc] (this media)