Media 000133921: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

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TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000133921
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
Object taxonomy
Allactaga elater
Object organization
Side
NotApplicable
Orientation
--
Short description
zipped16 bit Tiff stack
Full description
Migrated MorphoSource 1 Media File Title: zipped16 bit Tiff stack Migrated MorphoSource 1 Media Group Title: MicroCT Migrated MorphoSource 1 Media File Description: Bones segmented from raw file using 3D Slicer.
Creator
--
Date created
--
Date uploaded
July 21, 2020

FILE OBJECT DETAILS Field Definitions

File name
Allactaga-elater--30045-.zip
File format(s)
ZIP archive, TIFF
File size
102 MB
Image width
2466
Image height
2274
Color space
BlackIsZero
Color depth
8
Compression
--
X pixel spacing
0.035500
Y pixel spacing
0.035500
Z pixel spacing
0.035500
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
4,674

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173, Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)

OWNERSHIP AND PERMISSIONS Field Definitions

Data uploaded by
Publication status
Open Download
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
--
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
NSF DBI- 1701665; NSF DBI-1701714; oVert TCN
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Verity Mathis (University of Florida's Natural History Museum) provided access to these data with data collection funded by NSF DBI-1701714. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object uf:mammals:30045 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173
Device facility
Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)
Creator
Andrew McIntosh and William Garcia
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
1.175
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
4
Projections
800
Voltage
65
Power
0.007995
Amperage
123
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000133921: Whole Body [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Andrew McIntosh and William Garcia
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000133921: Whole Body [CTImageSeries] [Etc] (this media)