Media 000140595: Whole Body
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

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GENERAL DETAILS Field Definitions

Media ID
000140595
Media type
Volumetric Image Series
Object element or part
Whole body
Object represented
Object taxonomy
Neotoma lepida
Side
NotApplicable
Orientation
--
Short description
zipped 16 bit Tiff stack
Full description
Migrated MorphoSource 1 Media File Title: zipped 16 bit Tiff stack Migrated MorphoSource 1 Media Group Title: microCT volume and derivatives Migrated MorphoSource 1 Media File Description: Bones segmented from raw file using 3D Slicer. Migrated MorphoSource 1 Media Group Description: One rib connecting the sternum to the right chamber is missing, three ribs connecting the sternum to the right chamber are missing, the left clavicle is also absent.
Creator
--
Date created
--
Date uploaded
July 26, 2020

FILE OBJECT DETAILS Field Definitions

File name
Neotoma-lepida--37681-.zip
File format(s)
ZIP archive, TIFF
File size
95.3 MB
Image width
1088
Image height
1726
Color space
BlackIsZero
Color depth
8
Compression
--
X pixel spacing
0.035500
Y pixel spacing
0.035500
Z pixel spacing
0.035500
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
3,864

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173, Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
--
IP holder
--
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
oVert TCN; NSF DBI-1701714; NSF DBI- 1701665
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Jeff Bradley(University of Washington, Burke Museum) provided access to these data oVert TCN. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object uwbm:mammal specimens:37681 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Bruker SkyScan 1173
Device facility
Karel F. Liem Bioimaging Facility of Friday Harbor Labs (University of Washington)
Creator
Andrew McIntosh, William Garcia, & Lauren Abbott
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
1.175
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
4
Projections
800
Voltage
65
Power
0.007995
Amperage
123
Surrounding material
air
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000140595: Whole Body [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Andrew McIntosh, William Garcia, & Lauren Abbott
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000140595: Whole Body [CTImageSeries] [Etc] (this media)