Media 000167363: Head, Day 48
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000167363
Media type
Volumetric Image Series
Object element or part
head, day 48
Object represented
Object taxonomy
Monodelphis domestica
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT Scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive \\r\\n\\r\\nMacrini:\\r\\n\\r\\nMonodelphis-48: Scans of the head of a frozen 48-day-old Monodelphis domestica (TMM-M 8269), Southwest Foundation for Biomedical Research, San Antonio, TX, for Ted Macrini of The University of Texas at Austin. Specimen scanned by Matthew Colbert 17 May 2005.\\r\\n\\r\\n16bitrot: 1024x1024 8-bit TIFF images. II, 180 kV, 0.133 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.03549 mm), S.O.D. 52 mm, 1400 views, 2 samples per view, inter-slice spacing 2 lines (= 0.03549 mm), field of reconstruction 17 mm (maximum field of view 17.00727 mm), reconstruction offset 7400, scanner scale 3800, reconstruction scale 1250. Acquired with 15 slices per rotation. Drift- and ring-removal processing done by Susan Garlock based on correction of raw sinogram data using IDL routines “RK_SinoDeDrift” and “RK_SinoRingProcSimul,” both with default parameters. Reconstructed with reconstruction angle -21 degrees. Rotation correction processing done by Susan Garlock using IDL routine “DoRotationCorrection.” Total slices = 795.\\r\\n
Creator
--
Date created
--
Date uploaded
November 25, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
1020 MB
Image width
982
Image height
868
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.016600
Y pixel spacing
0.016600
Z pixel spacing
0.035490
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
795

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Texas Memorial Museum
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
DEB-0309369, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Ted Macrini provided access to these data , with data collection funded by NSF DEB-0309369 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object tmm:m:8269 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1400
Voltage
180
Power
--
Amperage
133
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000167363: Head, Day 48 [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000167363: Head, Day 48 [CTImageSeries] [CT] (this media)