Media 000167367: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

In Collections

Project
· Public

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000167367
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
Monodelphis domestica
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 1622 \\r\\n\\r\\nMacrini:\\r\\nad-2: Scans of the head of an adult Monodelphis domestica for Ted Macrini of the American Museum of Natural History, Department of Mammalogy and Timothy Rowe of the University of Texas, DGS. Specimen scanned by Matthew Colbert 2 March 2007. \\r\\n\\r\\n16bit: 1024x1024 16-bit TIFF images. II, 210 kV, 0.09 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.06255 mm), S.O.D. 90 mm, 1800 views, 2 samples per view, inter-slice spacing 2 lines (= 0.06255 mm), field of reconstruction 28 mm (maximum field of view 29.84 mm), reconstruction offset 5000, reconstruction scale 5000. Acquired with 19 slices per rotation and 15 slices per set. Ring-removal processing done based on correction of raw sinogram data by Alison Mote using IDL routine “RK_SinoRingProcSimul,” with parameters “binwidth=21, bestof5=11.” Reconstructed with an angle of -3 degrees. Deleted the first and last three duplicate slices of each rotation. Total final slices = 825.\\r\\n
Creator
--
Date created
--
Date uploaded
November 25, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
918 MB
Image width
903
Image height
761
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.027340
Y pixel spacing
0.027340
Z pixel spacing
0.062550
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
825

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Texas Memorial Museum
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
DEB-0309369, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Ted Macrini provided access to these data , with data collection funded by NSF DEB-0309369 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object tmm:m:9038 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
1800
Voltage
210
Power
--
Amperage
90
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000167367: Head [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000167367: Head [CTImageSeries] [CT] (this media)