Media 000114485: Head [CTImageSeries] [Etc]
Represents:
Biological Specimen
In Collection

0 ADDITIONAL MEDIA RELATED TO ACQUISITION EVENT

COLLECTIONS MEDIA BELONGS TO

MEDIA TAGS

GENERAL DETAILS

Media ID
000114485
Media type
CTImageSeries
Object element or part
head
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 1634\\r\\n\\r\\nBell:\\r\\nrhino: Scans of the head of a whole preserved Rhinophis homolepis (CAS-SUR 13670) for Chris Bell of the University of Texas at Austin, Department of Geological Sciences. Specimen scanned by Matthew Colbert 22 March 2007. \\r\\n\\r\\n16bit: 1024x1024 16-bit TIFF images. II, 210 kV, 0.11 mA, intensity control on, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.01529 mm), S.O.D. 22 mm, 1400 views, 4 samples per view, inter-slice spacing 2 lines (= 0.01529 mm), field of reconstruction 6 mm (maximum field of view 7.287463 mm), reconstruction offset 7000, reconstruction scale 5000. Acquired with 19 slices per rotation and 15 slices per set. Flash and ring-removal processing done by Alison Mote based on correction of raw sinogram data using IDL routines “RK_SinoDeSpike” with default parameters and “RK_SinoRingProcSimul” with parameters “binwidth=21, besof5=11.” Reconstructed with cray = -2 and an angle of -10 degrees. Deleted first four duplicate slices of each rotation. Total final slices = 495.\\r\\n
Creator
--
Date created
--
Date uploaded
April 16, 2020

FILE OBJECT DETAILS

File format(s)
image/tiff
File size
505 MB
Image width
747
Image height
770
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.005860
Y pixel spacing
0.005860
Z pixel spacing
0.015290
Pixel spacing units
Mm
Number of images in set
495

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
Download reviewer
IP holder
California Academy of Sciences
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
--
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Chris Bell provided access to these data , with data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object cas:sur:13670 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Date
--
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
4
Projections
1400
Voltage
210
Power
--
Amperage
110
Surrounding material
empty container
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000114485: Head [CTImageSeries] [Etc] (this media).

Processing Details

Creator
Matthew Colbert
Date processed
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource


Media 000114485: Head [CTImageSeries] [Etc] (this media)