Media 000104547: Head
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000104547: Head
Open Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000104547
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
Plectrurus aureus
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 1543\\r\\n\\r\\nBell:\\r\\nplectrurus: Scans of the head of Plectrurus aureus (CAS 17177) for Chris Bell of The University of Texas at Austin, JSG. Specimen scanned by Matthew Colbert 29 November 2006.\\r\\n\\r\\n16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.13 mA, no filter, empty container wedge, no offset, slice thickness 2 lines (= 0.01811 mm), S.O.D. 26 mm, 1400 views, 4 samples per view, inter-slice spacing 2 lines (= 0.01811 mm), field of reconstruction 7 mm (maximum field of view 8.608662 mm), reconstruction offset 5000, reconstruction scale 3900. Acquired with 19 slice per rotation and 15 slices per set. Flash and ring-removal processing done based on correction of raw sinogram data by Alison Mote using IDL routines “RK_SinoDeSpike” and “RK_SinoRingProcSimul,” both with default parameters. Reconstructed with an angle of -3 degrees. Deleted last four duplicate slices of each rotation and blank slices 1-13. Rotation correction processing done using IDL routine “DoRotationCorrection.” Total final slices = 527.\\r\\n
Creator
--
Date created
--
Date uploaded
February 28, 2020
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
554 MB
Image width
854
Image height
721
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
X pixel spacing
0.006840
Y pixel spacing
0.006840
Z pixel spacing
0.018110
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
527
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Open Download
Download reviewer
IP holder
California Academy of Sciences
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Chris Bell provided access to these data , with data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
CAS:HERP:17177
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
--
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
4
Projections
1400
Voltage
180
Power
--
Amperage
1300
Surrounding material
empty container
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000104547: Head [CTImageSeries] [Etc] (this media).
Processing Details Field Definitions
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None