Media 000109409: Trunk
Open Download
Type Mesh
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
UMZC:Vertebrates:460.b Acanthiza pusilla
Managed by
Roger Benson

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Related Media (9)

Media produced from the same original imaging that created Media 000109409 (this media). Includes all media associated with this media through an imaging and processing workflow.

Parent Media (Top And Direct)

The media that was processed to create Media 000109409 (this media). The media immediately preceding this media in the imaging and processing workflow. Also the media closest to what was produced from original imaging or the media with the least amount of derived processing.

CTImageSeries
· Open Download

Other Related Media (8)

Other media associated with the original imaging that produced Media 000109409 (this media) excluding those listed above. For example, could include derived media produced from children of this media (grandchildren) or other derived media produced from the top parent of this media (sibling or cousin).

Mesh
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Mesh
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Mesh
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Mesh
· Open Download
Mesh
· Open Download
Mesh
· Open Download
Mesh
· Open Download
Mesh
· Open Download
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GENERAL DETAILS Field Definitions

Media ID
000109409
Media type
Mesh
Object element or part
trunk
Object represented
UMZC:Vertebrates:460.b
Object taxonomy
Acanthiza pusilla
Object organization
UMZC Zoological Specimens
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: Micro-CT volume and derivative mesh files
Creator
--
Date created
--
Date uploaded
March 13, 2020

FILE OBJECT DETAILS Field Definitions

File name
Acanthiza_pusilla_UMZC_460b_Trunk.ply
File format(s)
PLY
File size
129 MB
Points
1699687
Polygons
3436122
Map type
--
UV coordinates
False
Vertex color
False
Bounding box dimensions
16.011, 22.831, 24.442
Centroid coordinates
17.598, 14.868, 32.560
Units of point coordinates
Mm

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
1
Number of processing events
2 (0 steps)
Derived directly from
Media 000109407: Element Unspecified [CTImageSeries] [CT]
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Nikon Metrology XT H 225 ST, Cambridge Biotomography Centre (University of Cambridge)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Roger Benson
Data uploaded by
Roger Benson
Publication status
Open Download
Download reviewer
--
IP holder
Cambridge University Museum of Zoology
Copyright statement
 In Copyright
Creative Commons license
 Creative Commons BY-NC Attribution-NonCommercial 4.0 International
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson
Publisher
--
Cite as
Roger Benson provided access to these data originally appearing in "Navalon G, Bjarnason A, Griffiths E, Benson RBJ. 2022. Environmental structure in the evolutionary differentiation of bird skeletons. Nature 611, 306-311. doi: 10.1038/s41586-022-05372-y", the collection of which was funded by the European Research Council (ERC) starting grant TEMPO (ERC-2015-STG-677774) to Roger Benson. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
 ark:/87602/m4/M109409
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UMZC:Vertebrates:460.b was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Device facility
Cambridge Biotomography Centre (University of Cambridge)
Creator
Roger Benson, Tom Davies
Event date
May 12, 2021
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.5
Flux normalization
No
Pixel spacing calibration
--
Shading correction
Yes
Frame averaging
1
Projections
1500
Voltage
135
Power
--
Amperage
140
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000109407: Element Unspecified [CTImageSeries] [CT].

Processing Details Field Definitions

Creator
Roger Benson, Tom Davies
Event date
May 12, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000109407: Element Unspecified [CTImageSeries] [CT]

STEP 3: IMAGE PROCESSING

Derived Media 000109407: Element Unspecified [CTImageSeries] [CT] was processed to create derived Media 000109409: Trunk [Mesh] [Etc] (this media).

Processing Details Field Definitions

Creator
Roger Benson, Tom Davies
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000109409: Trunk [Mesh] [Etc] (this media)