Media 000115601: Anterior Body
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000115601: Anterior Body
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
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Media Display
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Project
· Public
TAGS
GENERAL DETAILS Field Definitions
Media ID
000115601
Media type
Volumetric Image Series
Object element or part
anterior body
Object represented
Object taxonomy
Thorius adelos
Object organization
Side
--
Orientation
--
Short description
--
Full description
Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive 2469\\r\\n\\r\\nHanken:\\r\\n208582A: Scans of the head and forelimbs of Thorius (Cryptotriton) adelos (MVZ 208582) for James Hanken of Harvard University and David Wake of the University of California Berkeley. Specimen scanned by Jessie Maisano 3 June 2011. Scanned in three parts and matched.\\r\\n\\r\\nscan parameters: Xradia. 4X objective, 80kV, 10W, 5s acquisition time, detector 17.9 mm, source -37.5 mm, XYZ [-404, 18950, 20 for bottom, other parts 4000 microns above], camera bin 2, angles ±96, 577 views, no filter, dithering, no sample drift correction. End reference (30 frames, each for 6s). Reconstructed with center shift -4.5, beam hardening 0, theta -28, byte scaling [-25, 400], binning 1, recon filter smooth (kernel size = 0.8). Total slices = 2402. Voxels are 4.53 microns.\\r\\n\\n\\nRelated URL: http://digimorph.org/specimens/Thorius_adelos/ Migrated MorphoSource 1 Media Group Description: Related URL: http://digimorph.org/specimens/Thorius_adelos/
Creator
--
Date created
--
Date uploaded
May 04, 2020
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
2.22 GB
Image width
864
Image height
739
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.004530
Y pixel spacing
0.004530
Z pixel spacing
0.004530
Pixel spacing units
Millimeters
Slice thickness
--
Number of images in set
2,402
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Copyright statement
Creative Commons license
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: James Hanken and David Wake provided access to these data , with data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
MVZ:Herp:MVZ:Herp:208582
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Jessie Maisano
Event date
--
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
--
Exposure time
5
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
none
Projections
577
Voltage
80
Power
0.01
Amperage
--
Surrounding material
--
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--
STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000115601: Anterior Body [CTImageSeries] [Etc] (this media).
Processing Details Field Definitions
Creator
Jessie Maisano
Event date
--
Software
--
Description
--
Description attachment
None