Media 000115748: Head
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen

Media Display

In Collections

Team
· Public
Project
· Public

TAGS

No tags found.

GENERAL DETAILS

Media ID
000115748
Media type
Volumetric Image Series
Object element or part
head
Object represented
Object taxonomy
Apodora papuana
Object organization
Side
--
Orientation
--
Short description
HRXCT scan - head
Full description
University of Texas High-Resolution X-ray CT Facility Archive Gheur: AMNH62019_FMNH211839_: Two snake heads scanned together but reconstructed separately: Apodora papuana (AMNH R62019; Indonesia: [Irian Jaya]: Hollandia: m-m. Jun 1938-Jul 1938, W. B. Richardson.) and Morelia viridis (FMNH 211839; no locality data, captive specimen, collector # SDZ 0459) for Damien Esquerre Gheur and Scott Keogh of The Australian National University. Specimens scanned by Matthew Colbert on 19 December 2016. 16bitTIFF: Scan parameters: NSI scanner. Fein Focus High Power source, 170 kV, 0.17 mA, aluminum filter, Perkin Elmer detector, 0.25 pF gain, 1 fps, 1x1 binning, no flip, source to object 232.0 mm, source to detector 1316.834 mm, continuous CT scan, no frames averaged, 0 skip frames, 3600 projections, 5 gain calibrations, 5 mm calibration phantom, data range [-0.5, 20.0] (grayscales adjusted from NSI defaults), beam-hardening correction = 0.1. Data reoriented prior to reconstruction. Slices resliced, flipped, rotated in ImageJ. Voxel size = 31.8 μm. Total slices = 1761.
Creator
--
Date created
December 19, 2016
Date uploaded
May 06, 2020

FILE OBJECT DETAILS

File format(s)
image/tiff
File size
1.59 GB
Image width
846
Image height
723
Color space
BlackIsZero
Color depth
16
Compression
--
Series type
Reconstructed image stack
X pixel spacing
0.031800
Y pixel spacing
0.031800
Z pixel spacing
0.031800
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,603

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS

Data uploaded by
Publication status
Restricted Download
IP holder
American Museum of Natural History
Copyright statement
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
Australian Research Council Discovery grant (DP150102403), NSF DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Scott Keogh and Damien Esquerre Gheur provided access to these data , with data collection funded by DP150102403 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object AMNH:Herpetology:R-62019 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Date
--
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Exposure time
1
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
none
Projections
3600
Voltage
170
Power
--
Amperage
170
Surrounding material
0.25 pF gain
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000115748: Head [CTImageSeries] [CT] (this media).

Processing Details

Creator
Matthew Colbert
Date processed
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000115748: Head [CTImageSeries] [CT] (this media)