Media 000117685: Whole Body, Stained
Restricted Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

TAGS

No tags found.

GENERAL DETAILS Field Definitions

Media ID
000117685
Media type
Volumetric Image Series
Object element or part
whole body, stained
Object represented
Object taxonomy
Crypturellus soui panamensis
Object organization
Side
--
Orientation
--
Short description
HRXCT scan (stained)
Full description
Migrated MorphoSource 1 Media File Title: HRXCT scan (stained) Migrated MorphoSource 1 Media Group Title: HRXCT scan Migrated MorphoSource 1 Media File Description: University of Texas High-Resolution X-ray CT Facility Archive\\r\\n\\r\\nLi: \\r\\nC¬_soui_stained: Scan of an iodine-stained specimen of Crypturellus soui panamensis (USNM 431446) for Zhiheng Li of The University of Texas. Specimen scanned by Matthew Colbert on 28 July 2016.\\r\\n\\r\\n16bitTIFF: Scan parameters: NSI scanner. Fein Focus High Power source, 180 kV, 0.17 mA, no filter, Perkin Elmer detector, 0.25 pF gain, 5 fps, 2x2 binning, no flip, source to object 266 mm, source to detector 1316.772 mm, helical continuous CT scan, vertical extent 182.9 mm, pitch 30.48 mm, 6 revolutions, 3 sets, 2 frames averaged, 0 skip frames, 9004 projections, 7 gain calibrations, 15 mm calibration phantom, data range [-2.0, 30.0] (grayscales adjusted from NSI defaults), beam-hardening correction = 0.15. Voxel size = 79.0 ?m. Helical sigma changed to 60.9661302944607. Total slices = 1817.\\r\\n
Creator
--
Date created
--
Date uploaded
June 16, 2020

FILE OBJECT DETAILS Field Definitions

File name
File format(s)
ZIP archive, TIFF
File size
2.54 GB
Image width
864
Image height
989
Color space
BlackIsZero
Color depth
16
Compression
--
X pixel spacing
0.079000
Y pixel spacing
0.079000
Z pixel spacing
0.079000
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
1,817

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Smithsonian Institution, National Museum of Natural History
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
Gordon and Betty Moore Foundation Grant 4498, DBI-1902242
Publisher
--
Cite as
Migrated MorphoSource 1 Media Citation Instructions: Julia Clarke provided access to these data , with data collection funded by the Gordon and Betty Moore Foundation Grant 4498 and data upload to MorphoSource funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
--
Additional usage agreement
None

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object USNM:BIRDS:USNM 431446 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
North Star Imaging NSI Custom build
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None
Reference attachment
None
Exposure time
0.2
Flux normalization
No
Pixel spacing calibration
--
Shading correction
No
Frame averaging
2
Projections
9004
Voltage
180
Power
--
Amperage
170
Surrounding material
0.25 pF gain
X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000117685: Whole Body, Stained [CTImageSeries] [Etc] (this media).

Processing Details Field Definitions

Creator
Matthew Colbert
Event date
--
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource

Media 000117685: Whole Body, Stained [CTImageSeries] [Etc] (this media)