Media 000362986: Head [CTImageSeries] [CT]
Represents:
Biological Specimen
In Collection

0 ADDITIONAL MEDIA RELATED TO ACQUISITION EVENT

MEDIA TAGS

GENERAL DETAILS

Media ID
000362986
Media type
CTImageSeries
Object element or part
head
Side
--
Orientation
--
Short description
HRXCT scan - head
Full description
University of Texas High-Resolution X-ray CT Facility Archive 1084 Cannatella Typhlonectes: Scans of the head of Typhlonectes nations (MVZ 179728) for Dr. David Canatella of The University of Texas at Austin. Specimen scanned by Matthew Colbert 21 September 2004. 16bitrot: 1024x1024 16-bit TIFF images. II, 180 kV, 0.133 mA, no filter, air wedge, no offset, slice thickness 2 lines (= 0.0294 mm), S.O.D. 43 mm, 1600 views, 3 samples per view, inter-slice spacing 2 lines (= 0.0294 mm), field of reconstruction 12 mm (maximum field of view 14.09126 mm), reconstruction offset 7360, reconstruction scale 1680. Acquired with 15 slices per rotation. Spike correction done by Susan Garlock on raw sinogram data using IDL routine “RK_SinoDeSpike” . Ring correction done using IDL routine “RKSinoRingProcSimul”. Images reconstructed with -7 degree rotation. Rotation correction done using IDL routine “DoRotationCorrection”. Total slices = 660.
Creator
--
Date created
September 21, 2004
Date uploaded
May 10, 2021

FILE OBJECT DETAILS

File format(s)
image/tiff
File size
1.68 GB
Image width
964
Image height
772
Color space
BlackIsZero
Color depth
16
Compression
Uncompressed
Series type
Reconstructed image stack
X pixel spacing
0.011700
Y pixel spacing
0.011700
Z pixel spacing
0.029400
Pixel spacing units
Mm
Slice thickness
0.0294
Number of images in set
660

IMAGE ACQUISITION AND PROCESSING AT A GLANCE

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)

OWNERSHIP AND PERMISSIONS

Data managed by
Data uploaded by
Download permission
Publish with Restricted Download
IP holder
Museum of Vertebrate Zoology, UC Berkeley
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
EF-0334952, DBI-1902242
Publisher
oUTCT PEN
Cite as
David Cannatella provided access to these data, with data collection funded by NSF EF-0334952 and data upload to MorphoSource funded by DBI-1902242.
Media preview mode
Interactive/Embeddable
Additional usage agreement

IDENTIFIERS AND EXTERNAL LINKS

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object mvz:amphibian and reptile specimens:179728 was imaged to create undeposited raw media.

Imaging Details

Modality
X-Ray Computed Tomography (CT/microCT)
Device
Varian Medical Systems (Bio-Imaging Research, Inc) ACTIS CT scanner with FeinFocus X-ray source
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
Matthew Colbert
Date
September 21, 2004
Software
--
Description
--
Imaging event description attachment
None
Imaging event reference attachment
None
Filter
--
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
3
Projections
1600
Voltage
180
Power
--
Amperage
133
Surrounding material
air wedge
Xray tube type
--
Target type
--
Detector type
--
Detector pixels X
--
Detector pixel size X
--
Detector pixels Y
--
Detector pixel size Y
--
Detector configuration
--
Source object distance
--
Source detector distance
--
Target material
--
Rotation number
--
Phase contrast
--
Optical magnification
--
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000362986: Head [CTImageSeries] [CT] (this media).

Processing Details

Creator
Date processed
May 10, 2021
Software
--
Description
--
Description attachment
None

Media produced by this event on MorphoSource


Media 000362986: Head [CTImageSeries] [CT] (this media)