Media 000377165: Stained Head
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Media 000377165: Stained Head
Restricted Download
Type
Volumetric Image Series
Modality
X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by
Login or create an account to download files
GENERAL DETAILS Field Definitions
Media ID
000377165
Media type
Volumetric Image Series
Object element or part
stained head
Object represented
Object taxonomy
Menetia greyii
Object organization
Side
--
Orientation
--
Short description
HRXCT scan - stained head
Full description
University of Texas High-Resolution X-ray CT Facility Archive
Daza:
13675B: Scan of the stained head of Menetia greyii (YPM HERR.013675; South Australia; Adelaide; St. Kilda) for Juan Daza of Sam Houston State University. Specimen stained 25 hours in 25% Lugol’s solution/75% distilled water. Specimen scanned by Jessie Maisano 5 April 2016. Specimen scanned in two parts and stitched using Xradia plugin.
scan parameters: Xradia. 4X objective, 80kV, 10W, 3s acquisition time, detector 16 mm, source -37 mm, XYZ [-234, 14609, -2355], camera bin 2, angles ±180, 1081 views, 0.15 mm SiO2 filter, dithering, no sample drift correction. Multiple reference. Reconstructed with center shift 3.5 for top and 4 for bottom, beam hardening 0.8, theta 22, byte scaling [-40, 900], binning 1, recon filter smooth (kernel size = 0.5). Total slices = 1705.
13675B.rcp: Xradia recipe with scan parameters.
16bit: 16bit TIFF images reconstructed by Xradia Reconstructor. Voxels are 4.70 microns.
Creator
Jessie Maisano
Date created
April 05, 2016
Date uploaded
August 12, 2021
FILE OBJECT DETAILS Field Definitions
File name
16bit.zip
File format(s)
ZIP archive, TIFF
File size
2.24 GB
Image width
992
Image height
1006
Color space
BlackIsZero
Color depth
16
Compression
--
Series type
Reconstructed image stack
X pixel spacing
0.004700
Y pixel spacing
0.004700
Z pixel spacing
0.004700
Pixel spacing units
Millimeters
Slice thickness
--
Number of images in set
1,705
IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions
Number of parent media
0
Number of processing events
1
(0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
Zeiss Xradia microXCT-400, The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
OWNERSHIP AND PERMISSIONS Field Definitions
Data managed by
Data uploaded by
Publication status
Restricted Download
Download reviewer
IP holder
Yale Peabody Museum
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On Any Repository
Funding attribution
DBI-1902242
Publisher
oUTCT PEN
Cite as
Data upload to MorphoSource was funded by DBI-1902242. The files were downloaded from www.MorphoSource.org, Duke University.
Media preview mode
Interactive/Embeddable
Additional usage agreement
None
IDENTIFIERS AND EXTERNAL LINKS Field Definitions
MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--
IMAGE ACQUISITION AND PROCESSING IN DETAIL
STEP 1: IMAGE ACQUISITION
Physical object
ypm:vz:013675
was imaged to create
undeposited raw media.
IMAGING DETAILS Field Definitions
Modality
X-Ray Computed Tomography (CT/microCT)
Device facility
The University of Texas High-Resolution X-ray Computed Tomography Facility (University of Texas at Austin)
Creator
--
Event date
--
Software
--
Description
--
Description Attachment
None
Photographic Reference
None
Filter
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Exposure time
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Flux normalization
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Pixel spacing calibration
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Shading correction
--
Frame averaging
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Projections
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Voltage
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Power
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Amperage
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Surrounding material
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X-ray tube type
--
Target type
--
Detector type
--
Detector pixels X
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Detector pixels size X
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Detector pixels Y
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Detector pixels size Y
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Detector configuration
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Source object distance
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Source detector distance
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Target material
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Rotation number
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Phase contrast
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Optical magnification
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Acquisition type
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STEP 2: IMAGE PROCESSING
Raw media (undeposited)
was processed
to create
derived
Media 000377165: Stained Head [CTImageSeries] [CT] (this media).
Processing Details Field Definitions
Creator
--
Event date
--
Software
--
Description
--
Description attachment
None