Media 000528602: Entire Specimen
Open Download
Type Volumetric Image Series
Modality X-Ray Computed Tomography (CT/microCT)
Media represents biological specimen
Managed by

Media Display

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No collections found.

TAGS

GENERAL DETAILS Field Definitions

Media ID
000528602
Media type
Volumetric Image Series
Object element or part
Entire specimen
Object represented
Object taxonomy
Buergeria japonica
Side
--
Orientation
--
Short description
--
Full description
DICE-CT stained with 1.25% buffered Lugols over 6 days. SVL 28.98mm, body weight 2g.
Creator
Leavey, Alice
Date created
January 31, 2023
Date uploaded
May 31, 2023

FILE OBJECT DETAILS Field Definitions

File name
Buergeria japonica UF-herp 113207.zip
File format(s)
ZIP archive, TIFF
File size
10.8 GB
Image width
2199
Image height
1946
Color space
BlackIsZero
Color depth
16
Compression
PackBits
X pixel spacing
0.015487
Y pixel spacing
0.015487
Z pixel spacing
0.015487
Pixel spacing units
Mm
Slice thickness
--
Number of images in set
3,163

IMAGE ACQUISITION AND PROCESSING AT A GLANCE Field Definitions

Number of parent media
0
Number of processing events
1 (0 steps)
Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240, UF Nanoscale Research Facility (University of Florida)

OWNERSHIP AND PERMISSIONS Field Definitions

Data managed by
Data uploaded by
Publication status
Open Download
IP holder
Florida Museum of Natural History, University of Florida
Copyright statement
Creative Commons license
--
Morphosource use agreement type
Standard
Permits commercial use
Commercial Use Not Permitted
Permits 3D use
3D Printing Limited
Required archival of published derivatives
On MorphoSource
Funding attribution
--
Publisher
--
Cite as
--
Media preview mode
Interactive/Embeddable
Additional usage agreement

IDENTIFIERS AND EXTERNAL LINKS Field Definitions

MorphoSource ARK
MorphoSource DOI
Not assigned
External identifier
--
External media URL
--

IMAGE ACQUISITION AND PROCESSING IN DETAIL

STEP 1: IMAGE ACQUISITION

Physical object UF:Herp:113207 was imaged to create undeposited raw media.

IMAGING DETAILS Field Definitions

Modality
X-Ray Computed Tomography (CT/microCT)
Device
General Electric phoenix v|tome|x m 240
Device facility
UF Nanoscale Research Facility (University of Florida)
Creator
Leavey, Alice
Event date
January 31, 2023
Software
Phoenix DatosX|A
Description
TIF image stack
Description attachment
None
Reference attachment
Exposure time
--
Flux normalization
--
Pixel spacing calibration
--
Shading correction
--
Frame averaging
3
Projections
2200
Voltage
80
Power
--
Amperage
200
Surrounding material
Air/foam
X-ray tube type
--
Target type
Reflection
Detector type
--
Detector pixels X
--
Detector pixels size X
--
Detector pixels Y
--
Detector pixels size Y
--
Detector configuration
Area (single or tiled detector)
Source object distance
--
Source detector distance
--
Target material
Tungsten (W)
Rotation number
--
Phase contrast
No
Optical magnification
No
Acquisition type
--

STEP 2: IMAGE PROCESSING

Raw media (undeposited) was processed to create derived Media 000528602: Entire Specimen [CTImageSeries] [CT] (this media).

Processing Details Field Definitions

Creator
Leavey, Alice
Event date
January 31, 2023
Software
--
Description
--
Description attachment

Media produced by this event on MorphoSource

Media 000528602: Entire Specimen [CTImageSeries] [CT] (this media)